ATAC Integration Help

Question

[bioinformatics.girl]

Pretty much desperate at this point since I've had this error for a week. The output is the following after entering the following command:

integration.anchors<- FindIntegrationAnchors(
  object.list = list(Seurat_1, Seurat_2, Seurat_3),
  anchor.features = row.names(Seurat_1),
  assay = c('peaks', 'peaks', 'peaks'),
  k.filter = NA,
  reduction = "rlsi",
  dims = 2:30
)

Where Seurat_X = seurat object.

Can someone please help. I needed this completed days ago.

[Jaykumar]

hello, I am curious if you have already performed LSI dimension reduction and stored it in each object before continuing with RLSI.