Recommendation for de novo scaffolder
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2.5 years ago

Hi, I performed de novo assembly using Canu following a hybrid method. I have both Illumina (PE) and Oxford Nanopore reads. I performed reference guided scaffolding using ragtag before, but now, I want to see if doing the scaffolding de novo has any impact on the chromosome length.

Can anyone recommend me any de novo scaffolder? Or any other approach that I can use to scaffold my contigs de novo? Thanks!

Assembly Genome • 572 views
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