Hello,
I am new to using genomic graphs vs linear references, so I have a question about the output formats and understanding more about what can be done with them. I have a whole genome FASTA, and I used minigraph to map this FASTA to a pangenome graph, producing a file in GAF format. What can I do to further analyze the file, or visualize it? I don't see anything online about how the GAF format can be further utilized.
New to me : you can view the rGFA reference GFA format from minigraph output with this tool:
https://github.com/codeatcg/VRPG