Entering edit mode
2.2 years ago
Panthanos
•
0
I have 50 samples from patients with one disease and another 50 samples from other different patients with the same disease and one more different disease. The samples are as matched as possible (case-controls of the same sex, age, height, etc.) but they are still different people.
How do I have to use CNVkit to get the CNVs of all the patients to then do a statistical analysis and see if there are significant differences between the number of CNVs?
Can I do a tumor-normal batch? Can I analyze the CNVs of each individual independently?
Any help is welcome to tackle this problem.
