OBITools - Problem with obiclean
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21 months ago
Elise • 0

Hello!

I've been following the OBITools (1.01) wolves diet tutorial for my dataset on vampire bats and successfully reached this step:

obiclean -s merged_sample -r 0.05 -H \ wolf.ali.assigned.uniq.c10.l80.fasta > wolf.ali.assigned.uniq.c10.l80.clean.fasta

Replacing with my file: obiclean -s merged_sample -r 0.05 -H \ bats.cat.ali.assigned.uniq.c2.L150.l30.fasta > bats.clean.fasta

The bats.clean.fasta file is created but remained empty, even after running this command for 5 days!! I changed the value (0.05) many times; from 0.02 to 1

Did you face a similar problem before? My file: bats.cat.ali.assigned.uniq.c2.L150.l30.fasta looks highly similar to the wolves' tutorial one.

Thank you!!

python OBITools metabarcoding obiclean • 379 views
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