How is the ABQ field in the VCF file calculated?
0
0
Entering edit mode
24 months ago
brunomoda • 0

The only information I found about this field was in the header:

ABQ = Average quality of variant-supporting bases (qual2)
`

Can someone provide me with the details of how this field is calculated? Is this average variant quality based on the Phred Score scale? If so, what is the difference from the QUAL field?

Thank you

ABQ VCF • 441 views
ADD COMMENT

Login before adding your answer.

Traffic: 4076 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6