error in determining minimum contigs in Velvet
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5 months ago
Kárita • 0

Does anyone know how I can resolve this error when determining the minimum number of contigs in Velvet?

Is this the command I'm using? I want them to have a minimum size of 1000 bp

velveth results_velvet 31 -shortPaired -fastq.gz -separate -min_contig_lgth 1000 Bacteria_G4_1.fastq.gz Bacteria_G4_2.fastq.gz

contigs terminal velvet • 404 views
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It helps a lot when you include the error message you are getting. In this case, the error is likely because -min_contig_lgth is not a parameter of velveth. It is a parameter of velvetg.

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I understand, thanks for the answer!

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