Subunit Annotation in Genome Scale Models
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Entering edit mode
15 months ago

HI

I'm trying to annotate all genes in iML1515 with their respective subunit information.

Is anyone aware of any method of doing this programmatically in Python?

Querying uniprot gives a string description, which I could parse using some complicated regex, but it is extremely clunky. ECMpy 2 does this, but it is not a good implementation.

Does anyone know any databases that directly tell you what the subunit number is?

database engineering uniprot metabolic enzyme • 371 views
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