Phylogeny aware alignment input

Question

[Meto]

Hello,

I want to perform a multiple sequence alignment with a phylogeny aware program. I am curious about the number of homologous sequences I should input for the most accurate results.

Some advice related to the subject regarding protocols used in such alignments is welcome.

Cheers,

Answer 1

[zjq6666666]

I think the number of sequnences you will use to make the tree is the same as the number of input sequences in the MSA.