Obtaining enriched motif result for each peak using ArchR
0
0
Entering edit mode
14 months ago
yuyu • 0

I'm analyzing scATAC-seq data using ArchR by following their official manual. in the section "12.1 Motif Enrichment in Differential Peaks", I obtained good results comparing the motif enrichment of differential peaks between two samples for a same cluster of cells. Now, I want to know which peaks were assigned for enrichment of the significant TFs in my results. Is it possible to do that?

I looked into the results returned by peakAnnoEnrichment, but it only contained TFs, p-values and the number of background peaks, etc.

motif ArchR R enrichment • 508 views
ADD COMMENT

Login before adding your answer.

Traffic: 4500 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6