Process localizer (1) terminated with an error exit status (1) predector error

Question

[analyst]

Dear all,

Predector command runs successfully for test data given in the manual:

Command: nextflow run -profile test,docker_sudo -resume -r 1.2.7 ccdmb/predector

However predector command for my data generates error:

Command: nextflow run -resume -r 1.2.7 -profile docker_sudo -config ./config.txt ccdmb/predector --proteome "/home/fungus/Data/check_predector/*.faa"

I have 145 proteomes of 7-9mb sizes i checked for three proteomes only but got error (please note that i have 96 cores server, 2tb storage, 440.5 GiB memory)

config.txt contains:

process {

  withLabel:cpu_low {
    cpus = 1
  }
  withLabel:cpu_medium {
    cpus = 4
  }
  withLabel:cpu_high {
    cpus = 96
  }

  withLabel:ram_low {
    memory = 2.GB
  }
  withLabel:ram_medium {
    memory = 8.GB
  }
  withLabel:ram_high {
    memory = 380.GB
  }
}

params {
  max_cpus = 90
  max_memory = 400.GB
}

Error:

Plus 4 more processes waiting for tasks… [91/8ed1aa] NOTE: Process apoplastp (1) terminated with an error exit status (137) -- Execution is retried (1) ERROR ~ Error executing process > 'localizer (1)'

Caused by: Process localizer (1) terminated with an error exit status (1)

Command executed:

run () { set -e TMP="tmp$$" LOCALIZER.py -e -i "$1" -o "${TMP}" 1>&2 cat "${TMP}/Results.txt"
rm -rf -- "${TMP}" } export -f run CHUNKSIZE="$(decide_task_chunksize.sh in.fasta "96" 100)" parallel --halt now,fail=1 --joblog log.txt -j "96" -N "${CHUNKSIZE}" --line-buffer --recstart '>' --cat run < in.fasta | cat > out.txt predutils r2js --pipeline-version "1.2.7" --software-version "1.0.3" -o out.ldjson localizer out.txt in.fasta

Command exit status: 1

Command output: (empty)

Command error: Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9
Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9
Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9
Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9 Error calling WEKA: Calling WEKA returned -9
Error calling WEKA: Calling WEKA returned -9 parallel: This job failed: run $PARALLEL_TMP parallel: This job failed: run $PARALLEL_TMP parallel: This job failed: run $PARALLEL_TMP
parallel: This job failed: run $PARALLEL_TMP Error calling WEKA: Calling WEKA returned -9 parallel: This job failed: run $PARALLEL_TMP parallel: This job failed: run $PARALLEL_TMP
parallel: This job failed: run $PARALLEL_TMP

Work dir:
/home/fungus/Apps/check_predector/work/b5/fcc9d7cfa77decd6c209b92955d602

Container: predector/predector:1.2.7

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named .command.sh

-- Check '.nextflow.log' file for details