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7 months ago
anna
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0
Hi, i'm working with 10 bacterial genomes and i would like to assign COG classification for all the genes contained in my sequences. I used PGAP and Prokka to annotate them and to find some specific genes. Now I'm trying to use the COGclassifier tool implemented on Conda/Ubuntu, using the .faa files (only translated sequences) downloaded from Prokka, that i concatenated using CAT command. Is this the right way to proceed or there is another better? It's the first time i make these kind of analysis. Hope someone could help me.
A.
