CNVs annotation after CNVkit and clinical databases

Question

[AIMAR]

Hello everyone, hope you're well. I am currently working on a CNVs analysis with CNVKit and I would like to know if there is someone who could help me on how to annotate my CNVs but also query clinical databases such as COSMIC, OncoKb, CIVIC in relation to my CNVs.

Thanks camarade !

Answer 1

[liushuailong001]

AnnotSV: an integrated tool for structural variations annotation

https://academic.oup.com/bioinformatics/article/34/20/3572/4970516

https://github.com/lgmgeo/AnnotSV

maybe this tool can help you.

[AIMAR]

Thanks very much for you help.