Entering edit mode
11 days ago
giulia.trauzzi
▴
30
Hi, I am phasing/imputing my genotypes and I am using Beagle. I am providing a reference genome for the imputation and I am not 100% confident that Beagle uses the reference panel (ref) for both phasing the genotypes and imputing them. I know it uses the ref for imputation but I was wondering if it also uses the same reference for phasing.
Anyone can confirm?
Thanks!