Entering edit mode
12 weeks ago
t.kajiyama
•
0
I want to predict TFBS using JASPAR motif. I have many sequences to predict, so I try to predict programmatically using JASPAR scan. But JASPAR doesn't provide API for scan. I tried to use R package Biostring, PWMScan(https://epd.expasy.org/pwmtools/pwmscan.php, it run as backend at JASPAR), and own implementation of calculation of PWM score. Score calculated by these tools are different from JASPARS' one. Anyone know how to predict programmatically TFBS with same score as JASPAR?
