GSEA of sugarcane
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Entering edit mode
11 weeks ago
analyst ▴ 70

I have gene list of sugarcane hybrid genome SofficinarumxspontaneumR570. The gene list looks like this:

SoffiXsponR570.01Ag000100 
SoffiXsponR570.01Ag000100 
SoffiXsponR570.01Ag000200 
SoffiXsponR570.01Ag000300 
SoffiXsponR570.01Ag000300

I need to perform GO term analysis and KEGG pathway analysis. For that I got GO Ids and Kegg ids as follows:

SoffiXsponR570.01Ag000100       
SoffiXsponR570.01Ag000100       
SoffiXsponR570.01Ag000200   K00799  GO:0005515
SoffiXsponR570.01Ag000300       
SoffiXsponR570.01Ag000300       
SoffiXsponR570.01Ag000300       
SoffiXsponR570.01Ag000400       
SoffiXsponR570.01Ag000500       
SoffiXsponR570.01Ag000600       GO:0005515
SoffiXsponR570.01Ag000600       GO:0005515
SoffiXsponR570.01Ag000700       
SoffiXsponR570.01Ag000700       
SoffiXsponR570.01Ag000800       
SoffiXsponR570.01Ag000800       
SoffiXsponR570.01Ag000800       
SoffiXsponR570.01Ag000800       
SoffiXsponR570.01Ag000900       
SoffiXsponR570.01Ag001000       GO:0005515
SoffiXsponR570.01Ag001000       GO:0005515
SoffiXsponR570.01Ag001000       GO:0005515
SoffiXsponR570.01Ag001100       GO:0004672 GO:0004713 GO:0005515 GO:0005524 GO:0006468
SoffiXsponR570.01Ag001200   K10357  GO:0003774 GO:0005515 GO:0005524 GO:0016459
SoffiXsponR570.01Ag001200   K10357  GO:0003774 GO:0005515 GO:0005524 GO:0016459
SoffiXsponR570.01Ag001300       
SoffiXsponR570.01Ag001400       GO:0016747
SoffiXsponR570.01Ag001500       GO:0004252 GO:0006508

Please guide how can i get Go terms and KEGG terms for above GO ids and KEGG ids to perform further analysis.

GSEA • 299 views
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