TFs and enrichment analysis for TRAP sequencing

Question

[Genesis]

Hi,

I wanted to get opinions on what are the best tools to get enrichment pathways out of TRAP-sequencing data, I am also working with rat data. Ideally I would like to also extract predicted transcription factors from my data set, I've been playing around with gprofiler and ChEA3 but wanted to know if there are other tools people recommend. Thank you.