Choosing which transposable element annotation to use for analysis
0
0
Entering edit mode
7 hours ago

Hello, I would love some help with figuring out TE annotations. I'm trying to analyse expression of TEs in bulk RNA- seq data and have come up with a challenge. After converting all the Fbgn to symbols, the TEs seem to have two different annotations? There's ones annotated with Fbti but also in the format like RRxxxxx_transposable_element from RepeatMasker. How do I know which one to analyse? Thanks so much for the help!!

transposable bulk_rna-seq element • 54 views
ADD COMMENT

Login before adding your answer.

Traffic: 4076 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6