Importing Mothur into Phyloseqs cons.taxonomy error

Question

[jahlen.pinelo]

Hi Everyone, I really want to use phyloseq to analyze and visualize my mothur 16s data but I cannot get the taxonomy file to import. I am using this tutorial: https://github.com/AndresICM/16S_metabarcoding_phyloseq

sharedfile="/fwmay/fwmay_comp.opti_mcc.shared" taxfile="/fwmay/fwmay_comp.opti_mcc.0.03.cons.taxonomy" mothur_data <- import_mothur(mothur_shared_file = sharedfile, mothur_constaxonomy_file = taxfile)

and I get this error: Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, : line 146 did not have 3 elements

I have checked and I see no errors in the cons.taxonomy file and I am at a loss. I am really struggling to get this to work for my analysis. Any help would be greatly appreciated