User: hliang

gravatar for hliang
hliang100
Reputation:
100
Status:
Trusted
Location:
United States
Last seen:
1 week, 2 days ago
Joined:
5 years, 5 months ago
Email:
h*******@gmail.com

about me

Posts by hliang

<prev • 3 results • page 1 of 1 • next >
0
votes
2
answers
1.5k
views
2
answers
Comment: C: Samtools problem with running (Conda)
... works for me on conda 4.7.5, macOS high sierra 10.13.4 ...
written 9 days ago by hliang100
2
votes
3
answers
9.5k
views
3
answers
Answer: A: Extract Allele At Particular Positions From Bam Files
... The new samtools mpileup can generate VCF output, although without genotype calling. For those who might be interested in using a newer version (0.2.0-rc6) of samtools and bcftools, you can try this way: samtools mpileup -uvDV -l sites.bed -f ref.fa input.bam | bcftools call -c - > output.vcf. ...
written 5.3 years ago by hliang100
4
votes
0
answers
1.2k
views
0
answers
Forum: Hard-Coded Bowtie2 Parameter '--B2-L' In Tophat
... I was testing different parameters of tophat2 recently. But I found that changing of some parameters has no effect, because they are fixed in the tophat source code (python). Tophat 2 can pass parameters to Bowtie 2 by using Bowtie 2 option name prefixed with "--b2-". Parameter --b2-L is for settin ...
bowtie2 forum tophat2 written 5.3 years ago by hliang100 • updated 5.2 years ago by Dan D6.8k

Latest awards to hliang

Popular Question 4.4 years ago, created a question with more than 1,000 views. For Hard-Coded Bowtie2 Parameter '--B2-L' In Tophat

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1963 users visited in the last hour