User: Timtico

gravatar for Timtico
Timtico330
Reputation:
330
Status:
Trusted
Location:
NL
Last seen:
6 years, 3 months ago
Joined:
9 years, 3 months ago
Email:
t********@gmail.com

PhD student in Fungal Genetics

Posts by Timtico

<prev • 35 results • page 1 of 4 • next >
0
votes
0
answers
1.5k
views
0
answers
Biostrings: Subsetting Vpatternmatch On Xstringset-Class
... I would like to get all the substrings of a patternmatch on a XStringSet-class. I now use the following code, but this ignores multiple matches and I have the feeling there is a better way to do it that uses biostrings fuctions. I load a fastafile into a XStringSet-class object and then search for ...
R bioconductor bioinformatics written 6.3 years ago by Timtico330
0
votes
2
answers
2.3k
views
2
answers
Cytoscape: Plot Custom Images Above Edges
... In my cytoscape network I would like to plot small custom images (barcharts) above each edge. I cannot find a app in the appstore that suits my needs. The workaround would be to have custom node pictures, I know I can select the graphics manually. But is there also a way to automate this. So it use ...
java cytoscape written 7.3 years ago by Timtico330 • updated 7.2 years ago by paul.thurmond.shannon0
1
vote
1
answer
2.6k
views
1
answers
Comment: C: Multiple Sequence Alignment Of Normal Text
... Thanks, the R biostrings lib contains an implementation of the levenstein algorithm, but what im looking for goes futher than calculating distances. ...
written 7.6 years ago by Timtico330
7
votes
1
answer
2.6k
views
1
answer
Multiple Sequence Alignment Of Normal Text
... Hello, I am interested in performing a kind of multiple sequence alignment using normal text. Lets say an array consisting of strings of 10 sentences each. Does anyone know of such kind a tool? I prefer Perl or R ...
perl R alignment text written 7.6 years ago by Timtico330 • updated 7.6 years ago by Zev.Kronenberg11k
1
vote
7
answers
3.4k
views
7
answers
Comment: C: How To Initiate Learning Perl?
... I must agree, "beginning perl for bioinformatics" is quite outdated. ...
written 7.7 years ago by Timtico330
0
votes
5
answers
5.4k
views
5
answers
Comment: C: Creating Sequence Logos From The Command Line
... thanks for that, i will try it out asap! ...
written 8.5 years ago by Timtico330
0
votes
4
answers
2.2k
views
4
answers
Comment: C: Solution For The Display Of Multi Dimensional Expression Data In Cytoscape?
... my nodes are different chemical compounds, the edges are genes encoding the enzymes that lead from one compound (source) to the target. ...
written 8.5 years ago by Timtico330
0
votes
4
answers
2.2k
views
4
answers
Comment: C: Solution For The Display Of Multi Dimensional Expression Data In Cytoscape?
... indeed that works well for the nodes, but not for the edges i'm afraid. I'm interested if someone could make a plugin where i can add graphics to edges. ...
written 8.5 years ago by Timtico330
0
votes
4
answers
2.2k
views
4
answers
Comment: C: Solution For The Display Of Multi Dimensional Expression Data In Cytoscape?
... Might be a good solution, but it might get a bit clunky. I will try it tonight :) ...
written 8.5 years ago by Timtico330
0
votes
5
answers
5.4k
views
5
answers
Comment: C: Creating Sequence Logos From The Command Line
... if you want i can provide the sourcecode of my way of doing it (see my answer). However it might be a bif different of our approach as I use Perl scripts to build position weight matrices. ...
written 8.5 years ago by Timtico330

Latest awards to Timtico

Teacher 8.5 years ago, created an answer with at least 3 up-votes. For A: Creating Sequence Logos From The Command Line
Appreciated 8.6 years ago, created a post with more than 5 votes. For Is There A Tool To Give A Visual Output Of A Pathway And Expression Data?
Student 8.6 years ago, asked a question with at least 3 up-votes. For Is There A Tool To Give A Visual Output Of A Pathway And Expression Data?
Popular Question 8.8 years ago, created a question with more than 1,000 views. For Dna Secondary Structure Prediction Of A Large Dataset
Popular Question 9.2 years ago, created a question with more than 1,000 views. For R: Heatmaps Log2 Scale Or Non Log Scale?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1055 users visited in the last hour