User: zeeefa

gravatar for zeeefa
zeeefa80
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Location:
Sverige
Website:
https://www.rsg-sweden...
Twitter:
@NazeefaFatima
Last seen:
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Joined:
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Studying bioinformatics. Exploring nanopore sequencing.

Posts by zeeefa

<prev • 12 results • page 1 of 2 • next >
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Comment: C: Long DNA reads aligned
... @WouterDeCoster Sorry if this sounds silly, second command "samtools sort -@8 -o youralignment.bam" doesn't seem to work. It instead says samtools sort [options] , whereas I have input file in .sam format. I have also tried with "minimap2 -ax map-ont -L -t 8". Is there something I missed/misunderst ...
written 11 weeks ago by zeeefa80
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Answer: A: Research Group for Phd Studies
... This might help you http://rsg-uk.iscbsc.org/resources/14-academic-courses-uk.html :) ...
written 3.5 years ago by zeeefa80
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Answer: A: What Is One Book Every Bioinformatician Should Read?
... ...
written 3.6 years ago by zeeefa80
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Answer: A: Interships in Bioinformatcs
... There definitely are internship opportunities in the field of Bioinformatics (or in the fields that involve Bioinformatics). I would recommend you to look for work experience within your institution (as well as other universities). Search for a lab/research group, have a look at their current projec ...
written 3.9 years ago by zeeefa80
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Answer: A: Constructing a phylogenetic tree of a gene family with over 400 sequences
... I'd suggest you to use the CIPRES portal for phylogenetics analysis :) it doesn't have MEGA though. ...
written 3.9 years ago by zeeefa80
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Answer: A: Optimal design for bioinformatics "lab" space?
... Good suggestions/comments! & Thanks to Casey for bringing up this topic! Here’s my input: I should mention first that I’m an undergrad (currently on a placement year) working on a Bioinformatics-related project. My university doesn’t have a workspace for Bioinformatics students, so I just sit i ...
written 3.9 years ago by zeeefa80
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Comment: C: Multiline Fasta To Single Line Fasta
... they asked for a quick method so I just posted what I knew off the top of my head really :( But you're right! Thank you :) ...
written 4.3 years ago by zeeefa80
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Answer: A: Phylogenetic Analysis By Maximum Likelihood (Paml) : Upon Phylip Input Yn00.Clt
... This might help: http://bit.ly/1utdbFg it converts FASTA alignment file to a non-interleaved/sequential Phylip format :) ...
written 4.3 years ago by zeeefa80
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Answer: A: Next Generation Sequencing for Beginners
... this might help :) https://www.biostars.org/p/3374/ ...
written 4.3 years ago by zeeefa80
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Answer: A: detection of positive selection in population using Tajima's n Fu Li test
... As far as I know, negative Tajima's D (<0) suggests that negative (purifying) selection is operating. It indicates an excess of low frequency variation/polymorphisms. ...
written 4.3 years ago by zeeefa80

Latest awards to zeeefa

Voter 18 days ago, voted more than 100 times.
Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: What Is One Book Every Bioinformatician Should Read?
Autobiographer 3.9 years ago, has more than 80 characters in the information field of the user's profile.
Supporter 4.3 years ago, voted at least 25 times.

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