User: sam.neaves

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sam.neaves20
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20
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Location:
United Kingdom
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4 years ago
Joined:
5 years, 1 month ago
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Posts by sam.neaves

<prev • 6 results • page 1 of 1 • next >
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Cdf file problem
... I am trying to make a csv file to do some machine learning in WEKA, the data set I want to use is GSE31799. I have used the following lines of code with other data sets with out a problem (For example GSE2109). I have downloaded the .CEL files into a folder extracted them and created a phenodata fi ...
R cdf microarray written 4.1 years ago by sam.neaves20 • updated 2.5 years ago by fengshugluck0
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Answer: A: Reactome Clarification
... Thanks for following my steps. Although I don't think it is a mistake or bug in the Biopax because most of the catalyst reactions are like this! Not just that one! I will try emailing someone on the Reactome team and hope for a reply. If I get one or I increase my understanding ill post an update ...
written 5.1 years ago by sam.neaves20
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Answer: A: Reactome Clarification
... Thanks for your help in this. It is appreciated. To give you more detail. I am using the 'Homo Sapiens.owl' file available from: http://www.reactome.org/download/current/biopax.zip . I am using SWI-Prologs RDF-Parser http://www.swi-prolog.org/pldoc/package/rdf2pl.html to bring the file into a Prol ...
written 5.1 years ago by sam.neaves20
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Reactome Clarification
... Hello, I am trying to understand how the biopax 3 format relates to the diagrams. (I do have the manual http://www.biopax.org/release/biopax-level3-documentation.pdf ) I am starting with manually going through the relations of a small pathway but I want to have some code that will do this automati ...
written 5.1 years ago by sam.neaves20 • updated 5.0 years ago by Biostar ♦♦ 20
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Comment: C: What Is The Meaning Of Reactome'S 'Set To Member' Reaction Attribute?
... Thank you- I think that makes sense. If that is indeed the case it's a bit confusing why they maintain it in the diagram key if it is depreciated! ...
written 5.1 years ago by sam.neaves20
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What Is The Meaning Of Reactome'S 'Set To Member' Reaction Attribute?
... What is the meaning of Reactomes 'Set to member' Reaction attribute? In the Reactome diagram key- under reaction attributes, there is a symbol of a dashed line ending with a black circle. What does this mean? I can't see any examples in the human Reactome (I might be being a bit blind here!) and I ...
written 5.1 years ago by sam.neaves20 • updated 5.1 years ago by B. Arman Aksoy1.2k

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