User: Denis

gravatar for Denis
Denis110
Reputation:
110
Status:
Trusted
Location:
Last seen:
4 hours ago
Joined:
5 years, 5 months ago
Email:
s**********@gmail.com

about me

Posts by Denis

<prev • 79 results • page 1 of 8 • next >
0
votes
1
answer
106
views
1
answers
Comment: C: Good questions and answers resources (forums) on Ecology and Statistics
... Thank you again! I'll try these. ...
written 8 days ago by Denis110
0
votes
1
answer
106
views
1
answers
Comment: C: Good questions and answers resources (forums) on Ecology and Statistics
... Thanks! There are some techniques/approaches which are in use basically in ecology now and poorly known among statisticians,but require strong statistical background. I think that's the main issue in my case. ...
written 8 days ago by Denis110
3
votes
1
answer
106
views
1
answer
Good questions and answers resources (forums) on Ecology and Statistics
... Hi there! I'm looking for a good place for asking questions related to Ecology and Statistics. I've tried `Cross Validated`, but still didn't get any answers on my posts. Thanks! ...
ecology written 8 days ago by Denis110 • updated 8 days ago by The160
0
votes
0
answers
112
views
0
answers
Understanding of fields meaning in HapMap.hmc.txt file from UNEAK pipeline in Tassel 3.0
... Where can i find description for all fields in `HapMap.hmc.txt` file i got in `UNEAK` pipeline? I need that to calculate `depth of coverage (DP)` and `allele depth (AD)` to use these for `VCF` file filtration. Is there any plugin in `Tassel` to filter out variants in resulted `VCF` file based on `DP ...
genome snp sequencing written 10 days ago by Denis110
1
vote
0
answers
843
views
0
answers
Comment: C: Analysis of paired-end GBS data
... Hi! Try GB-easy [enter link description here][1] [1]: https://github.com/dpwickland/GB-eaSy ...
written 10 days ago by Denis110
1
vote
0
answers
96
views
0
answers
Minimal requirements for the draft genome assembly
... Hello! I'm wondering are there any minimal requirements (e.g. minimal coverage, minimal N50, etc.) for the draft genome assembly? Or every assembly could be formally recognized as a draft genome assembly regardless its quality? ...
genome assembly sequence written 16 days ago by Denis110 • updated 16 days ago by RamRS23k
0
votes
1
answer
98
views
1
answers
Comment: C: Canonical Correspondence Analysis in R with Vegan library
... Thanks for reply! I've checked all links you provided before posting the question of course. The 2-nd option from your list is suitable for me. But I confused, which commands related to `CCA` and which to `Partial CCA`? ...
written 27 days ago by Denis110
2
votes
1
answer
98
views
1
answer
Canonical Correspondence Analysis in R with Vegan library
... Hi there! I'm looking for a tutorial for performing `Canonical Correspondence Analysis (CCA)` and assesing its quality in `R` using `Vegan` library. Is there any useful materials to check? Exemple of `CCA` i found in `Vegan` documentation is not very detailed in my opinion. ...
R written 29 days ago by Denis110 • updated 28 days ago by Jean-Karim Heriche20k
3
votes
1
answer
206
views
1
answers
Answer: A: Bootstrap values on the phylogenetic tree in Ape r package
... I solved the issue by the `R` code: plot(stree) nodelabels(round(myBoots/1000*100),adj = 0.7) where myBoots is numeric vector containing my bootstrap values ...
written 8 weeks ago by Denis110
0
votes
1
answer
206
views
1
answers
Comment: C: Bootstrap values on the phylogenetic tree in Ape r package
... There is no slot named `node.label` in my object of class `'phylo'` (i use ape 5.3). So i can not execute something like: tree$node.label <- as.numeric(tree$node.label)/1000 ...
written 8 weeks ago by Denis110

Latest awards to Denis

Scholar 8 weeks ago, created an answer that has been accepted. For A: Bootstrap values on the phylogenetic tree in Ape r package
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: Bootstrap values on the phylogenetic tree in Ape r package
Popular Question 12 weeks ago, created a question with more than 1,000 views. For Demultiplexing of the Illumina PE data
Supporter 13 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1538 users visited in the last hour