User: Haluk

gravatar for Haluk
Haluk160
Reputation:
160
Status:
Trusted
Location:
Lincoln, Nebraska
Last seen:
1 year, 2 months ago
Joined:
6 years, 10 months ago
Email:
h********@gmail.com

Posts by Haluk

<prev • 30 results • page 1 of 3 • next >
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Answer: A: iterating nodes example 'char const*' error
... It worked when I add the -abundance-min 1 option. ...
written 2.7 years ago by Haluk160
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Comment: A: iterating nodes example 'char const*' error
... Here is the code snippet provided in the GATB API Documentation. https://gist.github.com/haluk/df1f1c89ff4ae8fa2e7a I have the HDF5 file which is also generated by GATB. However, when I use the HDF5 file as an input to the program in the above, it gave me terminate called after throwing an instanc ...
written 2.7 years ago by Haluk160
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iterating nodes example 'char const*' error
... Hi, I'm following the provided code snippet of iterating nodes, but I got the " terminate called after throwing an instance of 'char const*' "error for the fasta test file in the link below. https://gist.github.com/haluk/934a469c5f1d81e121e9 ...
gatb written 2.7 years ago by Haluk160
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Comment: C: KEGG cancer pathways
... Do you know the cancer pathway ids? ...
written 2.9 years ago by Haluk160
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Answer: A: Weird Problem Installing Biopython on OS X Mavericks
... Try the following steps: cd /tmp git clone https://github.com/pypa/virtualenv.git cd virtualenv python virtualenv.py ~/pythonenv source ~/pythonenv/bin/activate pip install biopython ...
written 3.0 years ago by Haluk160
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Answer: A: How To Generate A Species Distribution From Blast Xml Output
... You can perform the taxonomy assignment, including BLAST, in Qiime. It gives you an OTU table. Then you can even get the taxonomy plots in different form of plots. ...
written 3.1 years ago by Haluk160
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Answer: A: How Many Human Pathways Exist In Kegg Database?
... If you need their graphs, I generated them in dot format. https://github.com/haluk/kegg ...
written 3.6 years ago by Haluk160
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Newick To Distance Matrix
... Hi, I have set of newick files and I want to convert them into distance matrix. I'm implementing my application in Java, so if there is any library in Java, it would be great. ...
matrix newick tree distance written 3.6 years ago by Haluk160 • updated 22 months ago by Biostar ♦♦ 20
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Answer: A: What Can We Do For The Reads That Are Not Mapped To The Genome?
... After assembling your unmapped reads, you can BLAST them to reference genome. It increases mapping rate. ...
written 3.6 years ago by Haluk160
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Answer: A: Snp Annotation Tool
... SnpEff ...
written 3.7 years ago by Haluk160

Latest awards to Haluk

Popular Question 17 months ago, created a question with more than 1,000 views. For Converting Sam To Bam
Epic Question 22 months ago, created a question with more than 10,000 views. For Converting Sam To Bam
Popular Question 23 months ago, created a question with more than 1,000 views. For Converting Sam To Bam
Great Question 2.3 years ago, created a question with more than 5,000 views. For Converting Sam To Bam
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For A: Concatenate Two .Fasta Files Into One
Scholar 2.7 years ago, created an answer that has been accepted. For A: iterating nodes example 'char const*' error
Popular Question 3.1 years ago, created a question with more than 1,000 views. For Converting Sam To Bam
Teacher 3.8 years ago, created an answer with at least 3 up-votes. For A: Concatenate Two .Fasta Files Into One
Popular Question 6.5 years ago, created a question with more than 1,000 views. For Snp Genotype Data

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