User: Bartosz Ulaszewski

Reputation:
70
Status:
Trusted
Location:
Poland
Scholar ID:
Google Scholar Page
Last seen:
6 months ago
Joined:
5 years, 8 months ago
Email:
u*****************@gmail.com

Scientific Assistant Kazimierz Wielki Univeristy, Bydgoszcz, POLAND

Posts by Bartosz Ulaszewski

<prev • 6 results • page 1 of 1 • next >
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Comment: C: No results of RepeatProteinMasker
... In general it depends on the number of cores used for an analysis. In my case when I've used 3 CPU's it took 7 day to mask a 450 Mbp genome, on the other hand with 40 CPU's 850Mbp genome was masked within 12 hrs. ...
written 6 months ago by Bartosz Ulaszewski70
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Comment: A: LOSITAN - illegal URL redirect
... Hi @nadya, same here but I use Ubuntu... it may have to do with changes with to *https* protocol of the Lositan repository? (just my guess). You can try to run Lositan as a standalone version which can be found on Github: https://github.com/tiagoantao/lositan Start with: 1. getLibs.sh 2. prepareLi ...
written 20 months ago by Bartosz Ulaszewski70
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Genome version number
... Our team is assembling a genome of a plant species. Is there any rules to give the assembly a particular version number for e.g. v 0.8 or 1.0. The genome will represent ~85% of the estimated genome size and >75% of complete CEGs. Thanks in advance. ...
genome assembly written 2.0 years ago by Bartosz Ulaszewski70
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Comment: C: Using MUMmer 3.9.4
... And one more thing in step 9 pwd should be between this symbol ` ...
written 2.7 years ago by Bartosz Ulaszewski70
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Answer: A: Using MUMmer 3.9.4
... @nancydong20 I had the same problem as you, I did these steps and it helped: 1. This is critical: Uninstall the existing MUMmer with Synaptic Package Manager. (If you install with `sudo apt-get install mummer`you get v 3.22 and it is still called by any software which you use. This is why you cann ...
written 2.7 years ago by Bartosz Ulaszewski70
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Restriction Sites Fragments For Gbs/Ddrad
... Hi I'm still a newbie in bioinformatics. I would like to know ( in theory) which enzyme is the best for GBS/ddRAD. My question is how to make a in silico whole plant genome enzyme digestion (e.g. ApeKI, EcoRI etc.) and distribution of fragments? Do you have any tips? Which pipeline/program is the be ...
enzyme written 5.6 years ago by Bartosz Ulaszewski70 • updated 9 months ago by Chanz R0

Latest awards to Bartosz Ulaszewski

Scholar 2.7 years ago, created an answer that has been accepted. For A: Using MUMmer 3.9.4
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For A: Using MUMmer 3.9.4
Popular Question 4.9 years ago, created a question with more than 1,000 views. For Restriction Sites Fragments For Gbs/Ddrad

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