User: har-wradim

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har-wradim20
Reputation:
20
Status:
New User
Location:
Germany
Last seen:
1 year ago
Joined:
5 years, 4 months ago
Email:
j****@yandex.com

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Posts by har-wradim

<prev • 5 results • page 1 of 1 • next >
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Answer: A: How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Seque
... A shorter and more user-friendly awk version without a limit on the number of input fasta records: awk -v size=1000 -v pre=prefix -v pad=5 '/^>/{n++;if(n%size==1){close(f);f=sprintf("%s.%0"pad"d",pre,n)}}{print>>f}' input.fasta Command arguments are: `size` -- chunk size, `pre` -- out ...
written 14 months ago by har-wradim20
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Comment: C: how to remove asterisk characters from a translated sequences (fasta format)?
... This is an old post, but for the benefit of future googlers: a `sed 's/*//g'` solution is absolutely safe in terms of escaping (I would not do it with the -i option though) - there is no reason for panic. `tr -d '*'` would be more elegant though. BUT: nothing can replace a format-aware utility, beca ...
written 20 months ago by har-wradim20
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Answer: A: Show Progress (Bar?) For Blast+ Query
... Here is a cross-platform solution in bash. The script indicates the percentage of rows in the input file consumed by blast in real time, which is a very good proxy of the process progress when the query is a large set of sequences. It's based on the idea that the input can be piped to blast, and the ...
written 5.0 years ago by har-wradim20
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Comment: C: How To Analyze And Interpret The Gtf File Only In Cuffilinks Output Folder?
... I think the description on http://cufflinks.cbcb.umd.edu/manual.html#gtfout is clear enough. ...
written 5.4 years ago by har-wradim20
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Answer: A: Newick Tree Reordering
... Have you tried figtree? ...
written 5.4 years ago by har-wradim20

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