User: Bioaln

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Bioaln330
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Posts by Bioaln

<prev • 116 results • page 1 of 12 • next >
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Comment: C: Is the union of cDNA sequences the exome?
... Thank you for this information. Indeed, this helps me identify the exons. ...
written 15 months ago by Bioaln330
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Comment: C: Is the union of cDNA sequences the exome?
... Currently I am not, so this seems to hold! Thanks. ...
written 15 months ago by Bioaln330
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Comment: C: Is the union of cDNA sequences the exome?
... So, technically this is the exome, i.e., the set of all (known) exons? ...
written 15 months ago by Bioaln330
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Comment: C: Any published data with known percentage of virus sequences?
... As there probably exist known viral sequences, you could try to estimate this percentage by blasting the sequences against the genome of interest. Do the union of nucleotide coverage, and divide by whole length. ...
written 15 months ago by Bioaln330
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Answer: A: Run a GO analysis for an non-model organism with annotation file
... What I would try: 1.) blast against the database of candidate homologs with known GO terms 2.) Take top hits, transfer GO terms 3.) FET + e.g., bonferroni. This answer is an extension of Jean-Karim's though. ...
written 15 months ago by Bioaln330
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Is the union of cDNA sequences the exome?
... Hello all, I've recently started with DNA-related analysis, and was wondering, whether, if I take: https://www.ensembl.org/info/data/ftp/index.html (cDNA) does this represent, for example, the human exome? If not, what are the differences, and how can one obtain the missing information then? Than ...
exome cdna dna-seq written 15 months ago by Bioaln330 • updated 15 months ago by lieven.sterck6.7k
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Comment: C: Regulatory network with python and R
... If this helped, please mark the question as answered. ...
written 15 months ago by Bioaln330
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Answer: A: Regulatory network with python and R
... Hello, Given very sparse definition, it seems you are trying to simply constructy a network object, useful for further analysis. 1. Obtain edges between genes based on expression 2. Compute properties of the network The first step is an active research area. I would suggest you look at: https:// ...
written 16 months ago by Bioaln330
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Comment: C: Joining a consortium
... Thank you for this answer. This is the part not clear to me. ...
written 18 months ago by Bioaln330
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Comment: C: Joining a consortium
... Ah yes, a postdoc position. ...
written 18 months ago by Bioaln330

Latest awards to Bioaln

Popular Question 15 months ago, created a question with more than 1,000 views. For Aligning miRNA sequences
Popular Question 15 months ago, created a question with more than 1,000 views. For Downloading multiple PDB sequences
Popular Question 18 months ago, created a question with more than 1,000 views. For Aligning miRNA sequences
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Aligning miRNA sequences
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Downloading multiple PDB sequences
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Calling muscle as a Java process
Centurion 2.1 years ago, created 100 posts.
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Downloading multiple PDB sequences
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Getting gene sequence from ncbi BioJava
Popular Question 3.1 years ago, created a question with more than 1,000 views. For Getting gene sequence from ncbi BioJava
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Pairwise sequence alignment with Biojava?
Appreciated 3.8 years ago, created a post with more than 5 votes. For A: How do you cite a tool that doesn't have a publication?
Good Answer 3.8 years ago, created an answer that was upvoted at least 5 times. For A: How do you cite a tool that doesn't have a publication?
Scholar 3.9 years ago, created an answer that has been accepted. For A: How do you cite a tool that doesn't have a publication?
Teacher 3.9 years ago, created an answer with at least 3 up-votes. For A: How do you cite a tool that doesn't have a publication?
Popular Question 4.1 years ago, created a question with more than 1,000 views. For Pairwise sequence alignment with Biojava?

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