User: Bioaln

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Bioaln230
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France
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Posts by Bioaln

<prev • 101 results • page 1 of 11 • next >
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Answer: A: Identify Transcription factor from a list of genes
... https://www.ncbi.nlm.nih.gov/pubmed/20211142, here ...
written 23 days ago by Bioaln230
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Comment: C: UniProt ID mapping API call
... Please refer to the accepted answer as to why this is not the optimal solution (my question is actually the python code from the proposed link). ...
written 4 weeks ago by Bioaln230
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Comment: C: UniProt ID mapping API call
... Thanks for the explanation! Keep up the good work! ...
written 4 weeks ago by Bioaln230
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Comment: C: UniProt ID mapping API call
... Thanks, this is a nifty workaround, yet I do not understand why they do not offer simple API calls for this. Time to build a conversion API webserver? ...
written 4 weeks ago by Bioaln230
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Comment: C: UniProt ID mapping API call
... Yes, I am aware of the raw files. So you are saying the only way is to parse whole UniProt, instead of calling the API on the level of a single case? This doesn't seem right - the API seems to be capable of returning e.g. json, which should work.. Your example does not work for e.g. gene IDs, does ...
written 4 weeks ago by Bioaln230
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UniProt ID mapping API call
... Hello. I've been recently trying to programatically convert a bunch of UniProt IDs to gene names. I found the UniProt API, which should do the job, something in the lines of: import urllib,urllib2 url = 'http://www.uniprot.org/uploadlists/' params = { 'from':'ACC', 'to ...
python api protein uniprot written 4 weeks ago by Bioaln230 • updated 4 weeks ago by Elisabeth Gasteiger1.2k
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Answer: A: extracting blast hit whith the highest bit score
... Maybe something in the lines of: sort --key 2 --numeric-sort results.txt | head -n 5 # this gets top 5 results. I didn't really test it tho. ...
written 6 weeks ago by Bioaln230
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Comment: C: Different binding pockets from softwares
... Not the AutoDock, a different docking software. ...
written 11 weeks ago by Bioaln230
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Answer: A: Different binding pockets from softwares
... Autodock is severely outdated, use the most recent one. ...
written 11 weeks ago by Bioaln230
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Comment: C: MutationTaster: automatic vs score
... There remains no problem, I interpret automatic as: well this protein is known to be in interaction etc., this is only semantics imho ...
written 3 months ago by Bioaln230

Latest awards to Bioaln

Centurion 23 days ago, created 100 posts.
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Downloading multiple PDB sequences
Popular Question 7 months ago, created a question with more than 1,000 views. For Getting gene sequence from ncbi BioJava
Popular Question 12 months ago, created a question with more than 1,000 views. For Getting gene sequence from ncbi BioJava
Popular Question 16 months ago, created a question with more than 1,000 views. For Pairwise sequence alignment with Biojava?
Appreciated 20 months ago, created a post with more than 5 votes. For A: How do you cite a tool that doesn't have a publication?
Good Answer 20 months ago, created an answer that was upvoted at least 5 times. For A: How do you cite a tool that doesn't have a publication?
Scholar 21 months ago, created an answer that has been accepted. For A: How do you cite a tool that doesn't have a publication?
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Popular Question 2.0 years ago, created a question with more than 1,000 views. For Pairwise sequence alignment with Biojava?

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