User: Bioaln

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Bioaln210
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210
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France
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3 days, 4 hours ago
Joined:
3 years, 6 months ago
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Posts by Bioaln

<prev • 94 results • page 1 of 10 • next >
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Comment: C: Different binding pockets from softwares
... Not the AutoDock, a different docking software. ...
written 19 days ago by Bioaln210
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Answer: A: Different binding pockets from softwares
... Autodock is severely outdated, use the most recent one. ...
written 20 days ago by Bioaln210
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Comment: C: MutationTaster: automatic vs score
... There remains no problem, I interpret automatic as: well this protein is known to be in interaction etc., this is only semantics imho ...
written 4 weeks ago by Bioaln210
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Answer: A: Representative heatmap/ clustering of RNA seq data with replcates
... Violin plot, boxplot, maybe even a swarmplot. ...
written 5 weeks ago by Bioaln210
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Answer: A: predict TF binding sites from DNA sequence
... Have you tried any of the: https://molbiol-tools.ca/Transcriptional_factors.htm http://alggen.lsi.upc.es/cgi-bin/promo_v3/promo/promoinit.cgi?dirDB=TF_8.3 http://jaspar.genereg.net/ JASPAR is known to be relatively OK. ...
written 6 weeks ago by Bioaln210
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Comment: C: bwa index error : Floating point exception
... Try to run it on a subset of the large sequence dump. ...
written 6 weeks ago by Bioaln210
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Answer: A: MutationTaster: automatic vs score
... Normally, this distinction occurs when there exist entries, manually annotated by a human being, and entries, which are the result of an automated workflow. If this is the case, I suggest you place your bets on the manual thing. (example: SwissProt vs. UniProt - TrEMBL) ...
written 6 weeks ago by Bioaln210
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Answer: A: Skills & qualities required to be a Bioinformatician
... There are approx. 5 levels of bioinformatics. 1.) running ~blast etc. 2.) automating ~blast etc. 3.) Custom Py|R scripts 4.) Larger workflows with some customizations 5.) Proper algorithms - for this you need proper knowledge of CompSci, discrete math, biophysics ... + distributed computing probab ...
written 6 weeks ago by Bioaln210
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Comment: C: Use of fortran in bioinformatics
... Interesting, calling it from higher level languages is definitely a common phenomenon indeed. ...
written 6 weeks ago by Bioaln210
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Comment: C: Use of fortran in bioinformatics
... Nice one, why would that be the reason? ...
written 6 weeks ago by Bioaln210

Latest awards to Bioaln

Popular Question 5 months ago, created a question with more than 1,000 views. For Getting gene sequence from ncbi BioJava
Popular Question 10 months ago, created a question with more than 1,000 views. For Getting gene sequence from ncbi BioJava
Popular Question 14 months ago, created a question with more than 1,000 views. For Pairwise sequence alignment with Biojava?
Appreciated 18 months ago, created a post with more than 5 votes. For A: How do you cite a tool that doesn't have a publication?
Good Answer 18 months ago, created an answer that was upvoted at least 5 times. For A: How do you cite a tool that doesn't have a publication?
Scholar 19 months ago, created an answer that has been accepted. For A: How do you cite a tool that doesn't have a publication?
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: How do you cite a tool that doesn't have a publication?
Popular Question 22 months ago, created a question with more than 1,000 views. For Pairwise sequence alignment with Biojava?

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