User: M K

gravatar for M K
M K510
Reputation:
510
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Trusted
Location:
United States
Last seen:
2 months, 1 week ago
Joined:
6 years, 5 months ago
Email:
m*******@yahoo.com

about me

Posts by M K

<prev • 166 results • page 1 of 17 • next >
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Comment: C: How to keep the gene id with highly FPKM.
... That's worked, but it gave me all highest FPKMs. What I need to keep the highest one only (i.e the highest value among all higher FPKM values) ...
written 3.6 years ago by M K510
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How to keep the gene id with highly FPKM.
... I have a text file contains three columns; the first coulmn is the Ensemble gene id, the second column is gene name, and the third column is FPKM. I am looking for R function to keep the Ensemble gene id that highly expressed (i.e has highest FPKM) only in this file. Example: from the data below, ...
R written 3.6 years ago by M K510 • updated 3.6 years ago by Pol70
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How to visulize SNPs and repeated sequence for certain mouse gene in the promoter region
... Using UCSC genome browser, I want to visualize SNPs and repetitive sequences in the promoter region for certain gene. For example, for mouse adora1 gene, how can we identify the SNPs and repeated sequences in 1000 bp promoter region. ...
genome gene snp sequencing written 3.6 years ago by M K510
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RepeatFamily in Mouse repeatMaskerfile
... Hi All, I Identified the repetitive sequences in 10kbp promoter region in mouse.I used GRanges package in R to create genomic ranges for both mouse repeatMasker file and 10kbp promoter. Then I used findovelap function in GRanges to find overlapping regions and I got them. Now, I want to add the b ...
genome R gene sequencing written 3.7 years ago by M K510 • updated 3.5 years ago by Biostar ♦♦ 20
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D-value instead of P-value in large sample size
... There are many recent discussions about using p-value in the large sample size (i.e 10,000). Most of these discussions say that p-value give a significant results in the case of large sample size because its based on sample size. There are many recommendations like reporting confidence intervals wit ...
genome R rna-seq written 3.9 years ago by M K510
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Is there any way to find repetitive DNA in the promoter region for specific gene using bio conductor
... I want to find what are the repeats in the promoter region for the following mouse genes Pole3,Prdx4,Stmn1. I used Bioconductor under R and I got all information and I got the promoter sequences (5kbp) for each of those genes using the following workflow in Bioconductor "Finding Candidate Binding Si ...
gene R next-gen sequence written 3.9 years ago by M K510 • updated 3.9 years ago by Santosh Anand5.1k
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Comment: C: Question about protiens
... Based on the domain for it which include Zinc finger which play a role for binding DNA, I expect may cause mutation, but so far I don't know what is it. ...
written 3.9 years ago by M K510
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Comment: C: Question about protiens
... Do you mean for Japanese rice ...
written 3.9 years ago by M K510
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Comment: C: Question about protiens
... No it is not. I am just curious about it. what I found so far it is uncharacterized corn protien ...
written 3.9 years ago by M K510
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Comment: C: Question about protiens
... So the question here what is the specific name of this protein. if the named or accession number is known it will be easy to look for more details about it ...
written 3.9 years ago by M K510

Latest awards to M K

Appreciated 23 months ago, created a post with more than 5 votes. For How to know that your RNA-seq is stranded or not?
Popular Question 23 months ago, created a question with more than 1,000 views. For Warning message in findOverlap function in R
Great Question 23 months ago, created a question with more than 5,000 views. For how to remove matching Gene ID from data frame in R
Appreciated 23 months ago, created a post with more than 5 votes. For What is the difference between a Read and a Fragment in RNA-seq?
Epic Question 23 months ago, created a question with more than 10,000 views. For what is the difference between single end and paired end in sequencing
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Prophet 23 months ago, created a post with more than 20 followers. For How to know that your RNA-seq is stranded or not?
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Popular Question 23 months ago, created a question with more than 1,000 views. For Looking for tutorials or workshops about repetitive element analysis in human genome.
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Popular Question 2.2 years ago, created a question with more than 1,000 views. For How to get just protein_coding genes using biomart in R
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Popular Question 2.4 years ago, created a question with more than 1,000 views. For How to get just protein_coding genes using biomart in R

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