User: M K

gravatar for M K
M K490
Reputation:
490
Status:
Trusted
Location:
United States
Last seen:
1 year, 5 months ago
Joined:
5 years, 12 months ago
Email:
m*******@yahoo.com

about me

Posts by M K

<prev • 166 results • page 1 of 17 • next >
0
votes
2
answers
881
views
2
answers
Comment: C: How to keep the gene id with highly FPKM.
... That's worked, but it gave me all highest FPKMs. What I need to keep the highest one only (i.e the highest value among all higher FPKM values) ...
written 3.1 years ago by M K490
5
votes
2
answers
881
views
2
answers
How to keep the gene id with highly FPKM.
... I have a text file contains three columns; the first coulmn is the Ensemble gene id, the second column is gene name, and the third column is FPKM. I am looking for R function to keep the Ensemble gene id that highly expressed (i.e has highest FPKM) only in this file. Example: from the data below, ...
R written 3.1 years ago by M K490 • updated 3.1 years ago by Pol60
0
votes
0
answers
919
views
0
answers
How to visulize SNPs and repeated sequence for certain mouse gene in the promoter region
... Using UCSC genome browser, I want to visualize SNPs and repetitive sequences in the promoter region for certain gene. For example, for mouse adora1 gene, how can we identify the SNPs and repeated sequences in 1000 bp promoter region. ...
genome gene snp sequencing written 3.1 years ago by M K490
0
votes
0
answers
875
views
0
answers
RepeatFamily in Mouse repeatMaskerfile
... Hi All, I Identified the repetitive sequences in 10kbp promoter region in mouse.I used GRanges package in R to create genomic ranges for both mouse repeatMasker file and 10kbp promoter. Then I used findovelap function in GRanges to find overlapping regions and I got them. Now, I want to add the b ...
genome R gene sequencing written 3.2 years ago by M K490 • updated 3.0 years ago by Biostar ♦♦ 20
1
vote
0
answers
1.8k
views
0
answers
D-value instead of P-value in large sample size
... There are many recent discussions about using p-value in the large sample size (i.e 10,000). Most of these discussions say that p-value give a significant results in the case of large sample size because its based on sample size. There are many recommendations like reporting confidence intervals wit ...
genome R rna-seq written 3.4 years ago by M K490
0
votes
1
answer
1.1k
views
1
answer
Is there any way to find repetitive DNA in the promoter region for specific gene using bio conductor
... I want to find what are the repeats in the promoter region for the following mouse genes Pole3,Prdx4,Stmn1. I used Bioconductor under R and I got all information and I got the promoter sequences (5kbp) for each of those genes using the following workflow in Bioconductor "Finding Candidate Binding Si ...
gene R next-gen sequence written 3.4 years ago by M K490 • updated 3.4 years ago by Santosh Anand5.0k
0
votes
1
answer
883
views
1
answers
Comment: C: Question about protiens
... Based on the domain for it which include Zinc finger which play a role for binding DNA, I expect may cause mutation, but so far I don't know what is it. ...
written 3.4 years ago by M K490
0
votes
1
answer
883
views
1
answers
Comment: C: Question about protiens
... Do you mean for Japanese rice ...
written 3.4 years ago by M K490
0
votes
1
answer
883
views
1
answers
Comment: C: Question about protiens
... No it is not. I am just curious about it. what I found so far it is uncharacterized corn protien ...
written 3.4 years ago by M K490
0
votes
1
answer
883
views
1
answers
Comment: C: Question about protiens
... So the question here what is the specific name of this protein. if the named or accession number is known it will be easy to look for more details about it ...
written 3.4 years ago by M K490

Latest awards to M K

Popular Question 20 months ago, created a question with more than 1,000 views. For How to get just protein_coding genes using biomart in R
Epic Question 20 months ago, created a question with more than 10,000 views. For what is the difference between single end and paired end in sequencing
Popular Question 22 months ago, created a question with more than 1,000 views. For How to get just protein_coding genes using biomart in R
Popular Question 22 months ago, created a question with more than 1,000 views. For Function for removing low expressed genes
Great Question 24 months ago, created a question with more than 5,000 views. For how to remove matching Gene ID from data frame in R
Student 24 months ago, asked a question with at least 3 up-votes. For What is the difference between a Read and a Fragment in RNA-seq?
Great Question 24 months ago, created a question with more than 5,000 views. For What is the better transformation we should use to transform the expression level?
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Function for removing low expressed genes
Great Question 2.2 years ago, created a question with more than 5,000 views. For What is the better transformation we should use to transform the expression level?
Epic Question 2.2 years ago, created a question with more than 10,000 views. For what is the difference between single end and paired end in sequencing
Great Question 2.2 years ago, created a question with more than 5,000 views. For what is the difference between single end and paired end in sequencing
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Error with reading zipped file using the R function read.table.
Great Question 2.2 years ago, created a question with more than 5,000 views. For how to remove matching Gene ID from data frame in R
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Error with reading zipped file using the R function read.table.
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Function for removing low expressed genes
Great Question 2.3 years ago, created a question with more than 5,000 views. For what is the difference between single end and paired end in sequencing
Popular Question 2.9 years ago, created a question with more than 1,000 views. For How to remove Mitochondrial genes from Human annotation file (.GTF)?
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Error with reading zipped file using the R function read.table.
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Nested if-else statement in R
Good Question 2.9 years ago, asked a question that was upvoted at least 5 times. For How to know that your RNA-seq is stranded or not?
Great Question 2.9 years ago, created a question with more than 5,000 views. For what is the difference between single end and paired end in sequencing
Appreciated 2.9 years ago, created a post with more than 5 votes. For How to know that your RNA-seq is stranded or not?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2234 users visited in the last hour