User: gauravdube007

Reputation:
0
Status:
New User
Last seen:
1 month, 3 weeks ago
Joined:
3 years, 5 months ago
Email:
g************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by gauravdube007

<prev • 15 results • page 1 of 2 • next >
0
votes
0
answers
181
views
0
answers
Comment: C: GeneMark-ES exits with "error, file not found: info/training.fna"
... Update: After posting, I have used the same command on another assembly which has better genome statistics than the previous one and it worked !!! It seems the problem is with 'probuild', as it requires atleast 10Mb of good data for training (ref: [https://www.researchgate.net/post/Genemark-ES_error ...
written 9 weeks ago by gauravdube0070
0
votes
0
answers
181
views
0
answers
Comment: C: GeneMark-ES exits with "error, file not found: info/training.fna"
... Hi Santosh, I don't have training.fna in the 'info' directory. The following files are present in the info/ directory: training.trace, dna.trace, dna.multi_fasta, dna.general, dna.gc.csv, dna.gap_distr. Please find my update below. ...
written 9 weeks ago by gauravdube0070
0
votes
2
answers
2.0k
views
2
answers
Comment: C: Genemark-Es Gtf Output Conversion To Mod
... Hi angelshiza, Recently, I have encountered with the same error ("error, file not found info/training.fna"). Have you found a solution to troubleshoot this error ? Any help is appreciated. Thanks in advance. ...
written 9 weeks ago by gauravdube0070
1
vote
0
answers
181
views
0
answers
GeneMark-ES exits with "error, file not found: info/training.fna"
... Dear All, I am trying to use GeneMark-ES Suite 4.32 to predict genes from a fungal genome. But GeneMark exits with: > error, file not found: info/training.fna To run the program, I am using the following command: ./gmes_petap.pl --ES --fungus --sequence CBS_contigs.fasta.masked The log fi ...
software error gene prediction genemark written 9 weeks ago by gauravdube0070
0
votes
2
answers
1.6k
views
2
answers
Comment: C: How to generate a scale for a phylogenetic tree?
... Thanks Dan for your reply. Please kindly take a look at this image generated by FigTree. I have generated this tree with 1000 bootstrap support using Seqboot-> Neighbor -> Consensus workflow of PHYLIP v3.69 with default parameters. Image Link:  The scale you see in this image has a value as ...
written 22 months ago by gauravdube0070
0
votes
1
answer
995
views
1
answers
Comment: C: Non-ATGC, small-case, 'N' characters in Fastq file
... Thanks a lot Brian. ...
written 23 months ago by gauravdube0070
2
votes
1
answer
995
views
1
answer
Non-ATGC, small-case, 'N' characters in Fastq file
... Hi All, I am currently performing genome assembly. I have generated the consensus fastq file using the commands below. But the fastq file consists of lot non-ATGC characters (highlighted with bold). What are these characters and how to handle these?  Commands used to generate Fastq file: >>b ...
fastq genome-assembly non-atgc small-case written 23 months ago by gauravdube0070 • updated 23 months ago by Brian Bushnell14k
1
vote
2
answers
1.6k
views
2
answers
How to generate a scale for a phylogenetic tree?
... Dear All, I have generated phylogenetic trees for a gene dataset by Neighbor joining and Maximum likelihood methods with 1000 boostrap replicates using PHYLIP v3.69 package. I observed in various research articles that the phylogentic trees also have a scale-bar (which mostly represents residue sub ...
nj scale bar phylogenetic tree ml written 2.0 years ago by gauravdube0070 • updated 2.0 years ago by Dan Gaston6.8k
0
votes
1
answer
1.6k
views
1
answers
Comment: C: How To Visualize The Quality Of Sequencing Data In Colorspace (Solid) Format?
... Hello Leandro Lima can you please help me with this post ?? Can Anyone Suggest Me A Program For Converting Dot-Bracket Notation Format To Standard Hybridization Format. Thanks in advance. ...
written 3.4 years ago by gauravdube0070
0
votes
1
answer
2.5k
views
1
answers
Comment: C: Download data from OMIM
... Hello Biojl can you please help me with this post ?? Can Anyone Suggest Me A Program For Converting Dot-Bracket Notation Format To Standard Hybridization Format. Thanks in advance. ...
written 3.4 years ago by gauravdube0070

Latest awards to gauravdube007

Popular Question 16 months ago, created a question with more than 1,000 views. For How to generate a scale for a phylogenetic tree?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1292 users visited in the last hour