User: bernatgel

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bernatgel1.2k
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Barcelona, Spain
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@bernatgel
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Joined:
4 years, 5 months ago
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Posts by bernatgel

<prev • 73 results • page 1 of 8 • next >
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Answer: A: Simulated CNVs maintaining size
... Hi Crisr, You can use the R/Bioconductor package [regioneR](http://bioconductor.org/packages/regioneR/) for that. It has a function called `randomizeRegions` that will move around your CNV regions maintaing their size and taking care that the randomized regions do not overlap. If you set the `per.c ...
written 5 weeks ago by bernatgel1.2k
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Comment: C: Systems administrator of bioinformatics linux systems at IGTP, Barcelona
... Great. Sorry for the inconvenience and thanks for reporting the problem. ...
written 5 weeks ago by bernatgel1.2k
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Comment: C: Systems administrator of bioinformatics linux systems at IGTP, Barcelona
... Hi h.mon The IT people tell me that the site should be accessible now from Brazil. Could you check if you can access it? Thanks! ...
written 6 weeks ago by bernatgel1.2k
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Comment: C: Systems administrator of bioinformatics linux systems at IGTP, Barcelona
... Ok, that's weird. It would seem like our domain is not accessible (blocked?) from some internet providers... I'll pass this information to the IT people to see if they might have any idea of what's happening... Thanks for the report! ...
written 6 weeks ago by bernatgel1.2k
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Comment: C: Systems administrator of bioinformatics linux systems at IGTP, Barcelona
... Ok, thank. I'll contact out IT department to see what's happening. ...
written 6 weeks ago by bernatgel1.2k
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Comment: C: Systems administrator of bioinformatics linux systems at IGTP, Barcelona
... Oops, it should be accessible from anywhere in the world. Where are you connecting from? I've copied in the post the complete job offer, but it should be possible to get some info about the institute, etc... ...
written 6 weeks ago by bernatgel1.2k
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Job: Systems administrator of bioinformatics linux systems at IGTP, Barcelona
... We are seeking a **Linux systems administrator** who will be responsible for the management of [a scientific computing facility](http://www.germanstrias.org/technology-services/high-performance-computing/) that includes a 240 core cluster, several servers, workstations, 500 Tb raw disk storage and b ...
sysadmin joboffer job written 6 weeks ago by bernatgel1.2k
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Answer: A: Using Circos plot to visualize RNA-seq data
... As @jrj.healey said, circos plot are pretty but they are not always your best bet, specially with lots of data. If you want a whole genome view of your data and position on the genome is important to you, you can use [karyoploteR]( http://bioconductor.org/packages/karyoploteR/) to create non-circula ...
written 7 weeks ago by bernatgel1.2k
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Answer: A: visualization of the translocations on the vertical scale
... Hi Bogdan, In R you can create a plot like the one you decribe with [karyoploteR](http://bioconductor.org/packages/karyoploteR/). Here's a small example with random data (random positions in the genome created with `createRandomRegions` from the package [regioneR](http://bioconductor.org/packages/ ...
written 7 weeks ago by bernatgel1.2k
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Comment: C: How to determine the surface markers in a gene list
... I would probably annotate them with Gene Ontology, with the "Cellular Compartment" part, and then look for membrane associated terms. ...
written 12 weeks ago by bernatgel1.2k

Latest awards to bernatgel

Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: Permutation test with gene size and GC contents
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
Guru 10 months ago, received more than 100 upvotes.
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
Librarian 12 months ago, created a post with more than 10 bookmarks. For karyoploteR: uncircle your genomes
Scholar 14 months ago, created an answer that has been accepted. For A: Permutation test with gene size and GC contents
Prophet 14 months ago, created a post with more than 20 followers. For karyoploteR: uncircle your genomes
Voter 14 months ago, voted more than 100 times.
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
Appreciated 15 months ago, created a post with more than 5 votes. For A: Permutation test with gene size and GC contents
Scholar 15 months ago, created an answer that has been accepted. For A: Permutation test with gene size and GC contents
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
Appreciated 15 months ago, created a post with more than 5 votes. For A: Permutation test with gene size and GC contents
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
Scholar 18 months ago, created an answer that has been accepted. For A: Permutation test with gene size and GC contents
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g

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