User: Aishwarya.Kulkarni

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Location:
United States
Last seen:
4 years, 10 months ago
Joined:
5 years, 1 month ago
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A*****************@cchmc.org

Posts by Aishwarya.Kulkarni

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Comment: C: Cannot coerce class 'structure("IRanges", package = "IRanges")' into a data.fram
... I didn't quiet understand, do you mean cat(hits, file="ABC.txt") ? ...
written 4.9 years ago by Aishwarya.Kulkarni20
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Comment: C: Cannot coerce class 'structure("IRanges", package = "IRanges")' into a data.fram
... Hi I am using matchPWM a function to scan a position weight matrix on and sequence to get the hits, and I am trying to output these hits into a file.  ...
written 4.9 years ago by Aishwarya.Kulkarni20
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Comment: A: Cannot coerce class 'structure("IRanges", package = "IRanges")' into a data.fram
... when I give the command, it gives me an error cat(hits, file="ABC.txt") Error in cat(list(...), file, sep, fill, labels, append) :    argument 1 (type 'S4') cannot be handled by 'cat' > class(hits) [1] "XStringViews" attr(,"package") [1] "Biostrings" ...
written 4.9 years ago by Aishwarya.Kulkarni20
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Comment: C: Cannot coerce class 'structure("IRanges", package = "IRanges")' into a data.fram
... I did try saving it with save , however it gives me a gibberish output in the file. ...
written 4.9 years ago by Aishwarya.Kulkarni20
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Comment: C: Cannot coerce class 'structure("IRanges", package = "IRanges")' into a data.fram
... ok, if that's the case then how do I output the structure into a file? ...
written 4.9 years ago by Aishwarya.Kulkarni20
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Cannot coerce class 'structure("IRanges", package = "IRanges")' into a data.frame error.
... Hi, I am trying to output a result of matchPWM and I get the following error when I try to output it using write command: write(as.data.frame(data), "chr9_RBPJ_R.txt", sep="\n") cannot coerce class 'structure("IRanges", package = "IRanges")' into a data.frame where data is  data<-list(hits ...
R written 4.9 years ago by Aishwarya.Kulkarni20 • updated 4.2 years ago by Biostar ♦♦ 20
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Comment: C: Error in .normargSubject(subject) : active masks are not supported yet, please
... I did try to use the command and it threw me an error:   Error in function (classes, fdef, mtable)  :   unable to find an inherited method for function unmasked for signature "BSgenome" ...
written 4.9 years ago by Aishwarya.Kulkarni20
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Error in .normargSubject(subject) : active masks are not supported yet, please complain! in matchPWM, Biostrings
... I am using Biostrings package matchPWM method and I am using the following steps: > library(BSgenome.Hsapiens.UCSC.hg19) >loading my pwm >matchPWM(pwm, Hsapiens) Error in .normargSubject(subject) :   active masks are not supported yet, please complain! What is the error about and what c ...
R biostrings written 4.9 years ago by Aishwarya.Kulkarni20 • updated 4.9 years ago by Devon Ryan90k

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