User: ElCascador

gravatar for ElCascador
ElCascador20
Reputation:
20
Status:
New User
Location:
European Union
Last seen:
2 months, 1 week ago
Joined:
4 years, 6 months ago
Email:
a************@gmail.com

Posts by ElCascador

<prev • 3 results • page 1 of 1 • next >
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Annotating a GenomicRanges object in R
... Hi, I have a GenomicRange object that I want to annotate. It's region based. There's obviously numerous way to do it but I would like to do it in R. I'm looking at the annotatr Bioconductor package: https://bioconductor.org/packages/release/bioc/html/annotatr.html Is there a better way to do it ...
annotation R written 10 weeks ago by ElCascador20
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Imputation and phasing of one sample at a time or all samples together ?
... Hi, Is there any benefits of phasing haplotypes for all your samples instead of doing it sample by samples ? Doing it per individual basis helps with computation type by helping parallelise. I'm using SHAPEIT and IMPUTE2 and I don't see what benefit it would bring doing it with all my samples at a ...
shapeit impute2 imputation written 20 months ago by ElCascador20
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Same REF and ALT base marked as polymorphics in 3 individuals VCF
... Hi ! I received VCF files for 3 individuals from exom sequencing. One line is as this : 1 859913 rs112703963 A A 104 . DN=132;DA=A/G;GM=none;FG=upstream-gene;FD=upstream-variant-2KB;CP=0.927;CG=-3.770;AA=G;DV=by-frequency,by-cluster;RM=(CCG)n;DSP=416;CPG=858971-861632 GT:PL:DP:GQ 0/1:139,0,186:23 ...
vcf written 4.5 years ago by ElCascador20 • updated 4.5 years ago by Devon Ryan85k

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Popular Question 20 months ago, created a question with more than 1,000 views. For Same REF and ALT base marked as polymorphics in 3 individuals VCF

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