User: me
me • 690
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Posts by me
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... I suspect it is a variation on [P0DOX7][1]
[1]: https://www.uniprot.org/uniprot/P0DOX7 ...
written 9 weeks ago by
me • 690
0
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1
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225
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1
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... Could you describe what exactly you mean by "description" ...
written 4 months ago by
me • 690
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... This will fail in a large number of cases as the NCBI does not have all UniProt accessions. ...
written 4 months ago by
me • 690
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1
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207
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... The UniProt flat file format is not the same as the EMBL format even if it is quite close. So you might run into issues if your software expects real EMBL. ...
written 5 months ago by
me • 690
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... We are at SIB Swiss-Prot working on UniProt are offsite, wait until thursday ;) ...
written 11 months ago by
me • 690
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... By chemistry is a bit limited so I need my colleague to help with stoichiometric factors and it's production week so time is hard to get. ...
written 12 months ago by
me • 690
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461
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... Running out of space for the Rhea part, we will make a separate Q&A ...
written 12 months ago by
me • 690
2
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1
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461
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... 1) Is correct in the query with
?protein up:reviewed true .
2) The query in the Q. does not return anything for taxon:3702 as there are no rdfs:subClasses for Aribidopsis Thaliana, it is a leaf node. This means the entry is directly linked to that taxon instead of via it's ancestors. This i ...
written 12 months ago by
me • 690
0
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... It would probably work ok on our endpoint. But I think we got just the tool [you want, namely prosite][1]. I would also have a look at not using a database at all in that case as they will not perform optimally for your use case.
[1]: https://prosite.expasy.org/scanprosite/ ...
written 16 months ago by
me • 690
2
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1
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... This is a comment because it is not at all answering your question. Instead of building your own database why not use our SPARQL.uniprot.org. This is likely to be better modelled than biosql is for the UniProt datamodel.
Otherwise I suspect your hardware is not at the level that one would use for ...
written 16 months ago by
me • 690
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