User: me
me • 690
- Reputation:
- 690
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- Location:
- Switzerland
- Twitter:
- @jervenbolleman
- Last seen:
- 1 week, 1 day ago
- Joined:
- 5 years, 8 months ago
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Posts by me
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... I am looking for the documentation of which methods supported by a handle. Specifically how to given a handle in a graph get it's direct edges. I can find the link to the documentation at https://github.com/vgteam/libhandlegraph. ...
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... I suspect it is a variation on [P0DOX7][1]
[1]: https://www.uniprot.org/uniprot/P0DOX7 ...
written 8 months ago by
me • 690
0
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416
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... Could you describe what exactly you mean by "description" ...
written 10 months ago by
me • 690
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... This will fail in a large number of cases as the NCBI does not have all UniProt accessions. ...
written 10 months ago by
me • 690
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... The UniProt flat file format is not the same as the EMBL format even if it is quite close. So you might run into issues if your software expects real EMBL. ...
written 11 months ago by
me • 690
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... We are at SIB Swiss-Prot working on UniProt are offsite, wait until thursday ;) ...
written 17 months ago by
me • 690
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... By chemistry is a bit limited so I need my colleague to help with stoichiometric factors and it's production week so time is hard to get. ...
written 18 months ago by
me • 690
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557
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... Running out of space for the Rhea part, we will make a separate Q&A ...
written 18 months ago by
me • 690
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... 1) Is correct in the query with
?protein up:reviewed true .
2) The query in the Q. does not return anything for taxon:3702 as there are no rdfs:subClasses for Aribidopsis Thaliana, it is a leaf node. This means the entry is directly linked to that taxon instead of via it's ancestors. This i ...
written 18 months ago by
me • 690
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... It would probably work ok on our endpoint. But I think we got just the tool [you want, namely prosite][1]. I would also have a look at not using a database at all in that case as they will not perform optimally for your use case.
[1]: https://prosite.expasy.org/scanprosite/ ...
written 22 months ago by
me • 690
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For A: Does UniProt have complete SNP information (from dbSNP)?
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For A: Genomics is not Special. Computational Biologist are reinventing the wheel for b
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For A: Downloading dataset of PTM sites from UniProt
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For A: Get MW of a protein given a uniprot ID in R
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