User: me
me • 720
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- @jervenbolleman
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Posts by me
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0
votes
1
answer
118
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1
answers
... For the record the query
PREFIX rdf:
PREFIX skos:
PREFIX bp:
PREFIX up:
SELECT
?protein
?acc
?entry
?goTerm
WHERE
{
{
SELECT
?protein
(IRI(CONCAT("http://purl.un ...
written 28 days ago by
me • 720
1
vote
1
answer
118
views
1
answers
... This is an endpoint error. I suggest contacting the relevant helpdesks. ...
written 4 weeks ago by
me • 720
2
votes
1
answer
108
views
1
answers
... In the UniProt RDF model, the accession is only in the IRI of the form `http://purl.uniprot.org/uniprot/${ACCESSION}`.
To go from an accession string in pathway commons to a IRI one uses a SPARQL snippet like:
VALUES ?acc { "P05067" }
BIND(IRI(CONCAT("http://purl.uniprot.org/uniprot", ?acc ...
written 4 weeks ago by
me • 720
1
vote
1
answer
214
views
1
answer
... I am looking for the documentation of which methods supported by a handle. Specifically how to given a handle in a graph get it's direct edges. I can find the link to the documentation at https://github.com/vgteam/libhandlegraph. ...
0
votes
2
answers
686
views
2
answers
... I suspect it is a variation on [P0DOX7][1]
[1]: https://www.uniprot.org/uniprot/P0DOX7 ...
written 18 months ago by
me • 720
0
votes
1
answer
770
views
1
answers
... Could you describe what exactly you mean by "description" ...
written 21 months ago by
me • 720
0
votes
1
answer
770
views
1
answers
... This will fail in a large number of cases as the NCBI does not have all UniProt accessions. ...
written 21 months ago by
me • 720
0
votes
1
answer
503
views
1
answers
... The UniProt flat file format is not the same as the EMBL format even if it is quite close. So you might run into issues if your software expects real EMBL. ...
written 21 months ago by
me • 720
0
votes
2
answers
1.4k
views
2
answers
... We are at SIB Swiss-Prot working on UniProt are offsite, wait until thursday ;) ...
written 2.3 years ago by
me • 720
0
votes
1
answer
679
views
1
answers
... By chemistry is a bit limited so I need my colleague to help with stoichiometric factors and it's production week so time is hard to get. ...
written 2.4 years ago by
me • 720
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For A: Does UniProt have complete SNP information (from dbSNP)?
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For Image analysis specialist / scientific programmer | sciCORE University of Basel
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For A: Does UniProt have complete SNP information (from dbSNP)?
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For Image analysis specialist / scientific programmer | sciCORE University of Basel
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For A: Genomics is not Special. Computational Biologist are reinventing the wheel for b
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For A: Downloading dataset of PTM sites from UniProt
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For A: Genomics is not Special. Computational Biologist are reinventing the wheel for b
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2.9 years ago,
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For A: Does UniProt have complete SNP information (from dbSNP)?
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For A: Genomics is not Special. Computational Biologist are reinventing the wheel for b
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For A: Genomics is not Special. Computational Biologist are reinventing the wheel for b
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3.0 years ago,
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For A: Get MW of a protein given a uniprot ID in R
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For A: Get MW of a protein given a uniprot ID in R
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For A: Get MW of a protein given a uniprot ID in R
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For A: Get MW of a protein given a uniprot ID in R
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