User: me

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me720
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720
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Switzerland
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@jervenbolleman
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2 days, 8 hours ago
Joined:
6 years, 6 months ago
Email:
m*@jerven.eu

Posts by me

<prev • 69 results • page 1 of 7 • next >
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Answer: A: error when trying to perform a federated query in Pathway Commons SPARQL endpoin
... For the record the query PREFIX rdf: PREFIX skos: PREFIX bp: PREFIX up: SELECT ?protein ?acc ?entry ?goTerm WHERE { { SELECT ?protein (IRI(CONCAT("http://purl.un ...
written 28 days ago by me720
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Comment: C: error when trying to perform a federated query in Pathway Commons SPARQL endpoin
... This is an endpoint error. I suggest contacting the relevant helpdesks. ...
written 4 weeks ago by me720
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Answer: A: what is the uniprot RDF entity for "uniprot accession"?
... In the UniProt RDF model, the accession is only in the IRI of the form `http://purl.uniprot.org/uniprot/${ACCESSION}`. To go from an accession string in pathway commons to a IRI one uses a SPARQL snippet like: VALUES ?acc { "P05067" } BIND(IRI(CONCAT("http://purl.uniprot.org/uniprot", ?acc ...
written 4 weeks ago by me720
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Where is the documentation of libhandlegraph methods and objects
... I am looking for the documentation of which methods supported by a handle. Specifically how to given a handle in a graph get it's direct edges. I can find the link to the documentation at https://github.com/vgteam/libhandlegraph. ...
vg written 12 months ago by me720 • updated 11 months ago by anovak70
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Comment: C: Is there a HGNC symbol or any ENSEMBLE/RefSeq ID for this UniProt : Rheumatoid
... I suspect it is a variation on [P0DOX7][1] [1]: https://www.uniprot.org/uniprot/P0DOX7 ...
written 18 months ago by me720
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Comment: C: convert protein accession number to description
... Could you describe what exactly you mean by "description" ...
written 21 months ago by me720
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Comment: C: convert protein accession number to description
... This will fail in a large number of cases as the NCBI does not have all UniProt accessions. ...
written 21 months ago by me720
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Comment: C: How to download the .dat file of the UniProt Metazoa?
... The UniProt flat file format is not the same as the EMBL format even if it is quite close. So you might run into issues if your software expects real EMBL. ...
written 21 months ago by me720
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Comment: C: Extracting Sub-cellular location from Uniprot into tabular format
... We are at SIB Swiss-Prot working on UniProt are offsite, wait until thursday ;) ...
written 2.3 years ago by me720
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Comment: C: How to retrieve EC numbers and KOs for proteins of several taxons?
... By chemistry is a bit limited so I need my colleague to help with stoichiometric factors and it's production week so time is hard to get. ...
written 2.4 years ago by me720

Latest awards to me

Scholar 4 weeks ago, created an answer that has been accepted. For A: Does UniProt have complete SNP information (from dbSNP)?
Popular Question 7 months ago, created a question with more than 1,000 views. For Image analysis specialist / scientific programmer | sciCORE University of Basel
Voter 2.2 years ago, voted more than 100 times.
Scholar 2.4 years ago, created an answer that has been accepted. For A: Does UniProt have complete SNP information (from dbSNP)?
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Image analysis specialist / scientific programmer | sciCORE University of Basel
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Image analysis specialist / scientific programmer | sciCORE University of Basel
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For A: Genomics is not Special. Computational Biologist are reinventing the wheel for b
Good Answer 2.8 years ago, created an answer that was upvoted at least 5 times. For A: Downloading dataset of PTM sites from UniProt
Teacher 2.8 years ago, created an answer with at least 3 up-votes. For A: Genomics is not Special. Computational Biologist are reinventing the wheel for b
Scholar 2.9 years ago, created an answer that has been accepted. For A: Does UniProt have complete SNP information (from dbSNP)?
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: Genomics is not Special. Computational Biologist are reinventing the wheel for b
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: Genomics is not Special. Computational Biologist are reinventing the wheel for b
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: Get MW of a protein given a uniprot ID in R
Teacher 3.4 years ago, created an answer with at least 3 up-votes. For A: Get MW of a protein given a uniprot ID in R
Commentator 3.7 years ago, created a comment with at least 3 up-votes. For C: Genomics is not Special. Computational Biologist are reinventing the wheel for b
Scholar 3.9 years ago, created an answer that has been accepted. For A: Get MW of a protein given a uniprot ID in R
Teacher 3.9 years ago, created an answer with at least 3 up-votes. For A: Get MW of a protein given a uniprot ID in R
Supporter 3.9 years ago, voted at least 25 times.
Teacher 4.0 years ago, created an answer with at least 3 up-votes. For A: Get MW of a protein given a uniprot ID in R
Commentator 5.9 years ago, created a comment with at least 3 up-votes. For C: Genomics is not Special. Computational Biologist are reinventing the wheel for b
Teacher 5.9 years ago, created an answer with at least 3 up-votes. For A: Get MW of a protein given a uniprot ID in R
Scholar 5.9 years ago, created an answer that has been accepted. For A: Get MW of a protein given a uniprot ID in R
Scholar 6.0 years ago, created an answer that has been accepted. For A: Get MW of a protein given a uniprot ID in R

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