User: zhangz.cs

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zhangz.cs150
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150
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New User
Location:
China
Last seen:
3 years, 5 months ago
Joined:
4 years, 5 months ago
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z********@gmail.com

Posts by zhangz.cs

<prev • 17 results • page 1 of 2 • next >
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Comment: C: How can we use a read simulator to generate paired-end data with uneven coverage
... I'm looking for only artificial data. ...
written 3.5 years ago by zhangz.cs150
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How can we use a read simulator to generate paired-end data with uneven coverage?
... We plan to test a sv detection tool on paired-end data with uneven coverage. Could anyone please tell me how the data is generated?   Cheers, Zhen ...
sequencing written 3.5 years ago by zhangz.cs150 • updated 3.5 years ago by thackl2.5k
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How does bwa perform soft-clipping?
... Given a read, how many bases does bwa determine to be soft-clipped from the beginning? Cheers, Zhen ...
alignment written 3.5 years ago by zhangz.cs150
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Comment: C: where can I download hs37m.fa.gz?
... I got the information about the file from http://lh3lh3.users.sourceforge.net/alnROC.shtml. I don't know what the m stands for either. ...
written 3.9 years ago by zhangz.cs150
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where can I download hs37m.fa.gz?
... Could anyone please tell me where I can download the human reference genome hs37m.fa.gz? Thanks a lot! Cheers, Zhen ...
genome written 3.9 years ago by zhangz.cs150 • updated 3.9 years ago by Denise - Open Targets4.6k
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What are chimeric reads?
... What are chimeric reads? Is there any effective method to distinguish chimeric reads from normal ones? Can someone point me to a survey or reviews on that topic? Thank you a lot! Zhen ...
sequence written 3.9 years ago by zhangz.cs150 • updated 2.3 years ago by Shicheng Guo6.5k
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Comment: C: Download Geo Sra Data Using Aspera Connect
... The same thing happens to me. Changing from .putty to .openssh still requires me to enter a passphrase. ...
written 4.0 years ago by zhangz.cs150
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How is the WGSIM read simulator used to sequence a simulated genome at 5X haploid coverage?
... What is haploid coverage? What argument is used to control producing haploid coverage instead of diploid coverage? I know the '-h' option can enable the haploid mode, but I can't understand what the haploid mode really means. I hope someone can help me to answer these questions. Thanks!   Best Re ...
genome sequencing written 4.0 years ago by zhangz.cs150 • updated 4.0 years ago by Pierre Lindenbaum112k
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How is mate alignment which may generate soft-clipping signature implemented in bwa?
... Would one please describe the mate alignment algorithm that has been implemented in bwa? Is it kind of modified SW algorithm? Thank you! ...
alignment written 4.0 years ago by zhangz.cs150 • updated 3.9 years ago by Biostar ♦♦ 20
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How are the calls our deletion detection tool made assessed?
... Ryan Mills provided us with the following link where the vcf files can be downloaded: ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/phase1/analysis_results/integrated_call_sets/. These vcf files are used to compare our calls against. We studied one vcf file for chromosome 20, i.e. ALL.chr20.integrate ...
next-gen sequence written 4.3 years ago by zhangz.cs150 • updated 4.3 years ago by Biostar ♦♦ 20

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Popular Question 3.5 years ago, created a question with more than 1,000 views. For What are chimeric reads?

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