User: Quak

gravatar for Quak
Quak380
Reputation:
380
Status:
Trusted
Location:
United States
Last seen:
9 months ago
Joined:
6 years, 7 months ago
Email:
a******************@gmail.com

Posts by Quak

<prev • 68 results • page 1 of 7 • next >
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Comment: C: designing PCR for COVID19
... Thank you - I agree and understand. ...
written 9 months ago by Quak380
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Comment: C: designing PCR for COVID19
... your 4 answers 1 - and you 2 sounds weird - I feel I am bullied, without any construction feedback on where to go and why this is not a bioinformatics question. Yes I am asking it elsewhere :). Thank you again for moderating here - I love this place no matter what. ...
written 9 months ago by Quak380
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Comment: C: designing PCR for COVID19
... This is a terminology debate - qPCR kits are assays and one can find tons of posts here about designing qPCR primers. ...
written 9 months ago by Quak380
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Comment: C: designing PCR for COVID19
... Thanks for your comment - I wish the question was not closed to discuss in a better formatted place. Here are a few questions, If 96% sequence similarity exist with other SARS-like coronavirus strains, does that mean, it is not possible to find a "universal" primers ? is there any computational way ...
written 9 months ago by Quak380
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Comment: C: designing PCR for COVID19
... I believe there are already multiple posts related to designing qPCR primers here. The who idea of designing primer AFAIK is a bioinformatic tasks, there are multiple bioinformatic pipelines and method. Of course, I can rephrase the question, remove the COVID19 and make it less sensitive. I don't mi ...
written 9 months ago by Quak380
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(Closed) designing PCR for COVID19
... I read the False Negative of PCR test for COVID19 is high compare to expensive CT scans. https://pubs.rsna.org/doi/10.1148/radiol.2020200642 I was curious if experts can comment on why and what makes it difficult to design more accurate PCR given the COVID genomes is out there. ...
pcr; written 9 months ago by Quak380
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Comment: C: leafs in the MESH tree
... I thought bin stands for binary ! so didn't really inspect the content ! thank you. ...
written 9 months ago by Quak380
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leafs in the MESH tree
... Here, https://meshb.nlm.nih.gov/treeView - there is a tree that by clicking on each leaf one can get further down. I am trying to get the list of all the lowest level (leafs) of this tree. For example all the leafs under "diseases[C]". I have downloaded the meshDB from ftp://nlmpubs.nlm.nih.gov/onl ...
meshdb; pubmed; written 9 months ago by Quak380 • updated 9 months ago by a.zielezinski9.3k
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Comment: C: ensemble transcript ID to gene symbol using pybiomart
... It looks like it is the python API problem !! thanks for the confirmation. I do get the result in R but that filter does not exist in the python API. ...
written 12 months ago by Quak380
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Comment: C: ensemble transcript ID to gene symbol using pybiomart
... just added to the question ! ...
written 12 months ago by Quak380

Latest awards to Quak

Great Question 3.1 years ago, created a question with more than 5,000 views. For VCF files: Change Chromosome Notation
Prophet 3.1 years ago, created a post with more than 20 followers. For VCF files: Change Chromosome Notation
Good Question 3.1 years ago, asked a question that was upvoted at least 5 times. For VCF files: Change Chromosome Notation
Epic Question 3.1 years ago, created a question with more than 10,000 views. For VCF files: Change Chromosome Notation
Popular Question 3.1 years ago, created a question with more than 1,000 views. For global alignment using needleall
Popular Question 3.1 years ago, created a question with more than 1,000 views. For extracting certain region 16sRNA from Silva
Popular Question 3.1 years ago, created a question with more than 1,000 views. For pooling 16sRNA samples in UPARSE pipeline
Popular Question 3.1 years ago, created a question with more than 1,000 views. For What is the easiest way to see the overlap of pair end sequencing data
Popular Question 3.1 years ago, created a question with more than 1,000 views. For generating random newick tree
Popular Question 3.1 years ago, created a question with more than 1,000 views. For parse nxml file from pubmed
Popular Question 3.1 years ago, created a question with more than 1,000 views. For mapping metagenomics samples to multiple references genome
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: Feature extraction from protein sequences for machine learning classification
Popular Question 3.3 years ago, created a question with more than 1,000 views. For generating random newick tree
Popular Question 3.3 years ago, created a question with more than 1,000 views. For extracting certain region 16sRNA from Silva
Appreciated 3.9 years ago, created a post with more than 5 votes. For VCF files: Change Chromosome Notation
Popular Question 3.9 years ago, created a question with more than 1,000 views. For extracting certain region 16sRNA from Silva
Student 3.9 years ago, asked a question with at least 3 up-votes. For extracting certain region 16sRNA from Silva
Great Question 4.0 years ago, created a question with more than 5,000 views. For VCF files: Change Chromosome Notation
Popular Question 4.0 years ago, created a question with more than 1,000 views. For [W::sam_parse1] urecognized reference name; treated as unmapped
Popular Question 4.4 years ago, created a question with more than 1,000 views. For calculating the total length of cDNA for a given gene
Popular Question 4.4 years ago, created a question with more than 1,000 views. For [W::sam_parse1] urecognized reference name; treated as unmapped
Student 4.4 years ago, asked a question with at least 3 up-votes. For extracting certain region 16sRNA from Silva
Popular Question 5.1 years ago, created a question with more than 1,000 views. For VCF files: Change Chromosome Notation
Popular Question 5.2 years ago, created a question with more than 1,000 views. For VCF files: Change Chromosome Notation
Popular Question 6.0 years ago, created a question with more than 1,000 views. For VCF files: Change Chromosome Notation

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