User: BioApps

gravatar for BioApps
BioApps680
Reputation:
680
Status:
Trusted
Location:
Spain
Last seen:
3 months, 3 weeks ago
Joined:
3 years, 3 months ago
Email:
c******@dnabaser.com

Scientific interests:

- Microbial viruses

- Super-resolution microscopy in environmental microbiology

- Single gene detection in microorganisms by Fluorescence In Situ Hybridization (FISH) - development of geneFISH and of a probe design concept and software for polynucleotide probes

- Development of bioinformatics software for polynucleotide probe design and sequence analysis

 

Posts by BioApps

<prev • 93 results • page 1 of 10 • next >
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Comment: A: DNA Baser alternative
... DNA Baser v4 actually CAN save the contig to disk, even in trial period (so, this also answers the 3rd question: it does have a trial period). ...
written 3 months ago by BioApps680
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Comment: C: merge large amount of fastq files into a single one
... Nice solution. Yes. Basically you need to do a 'dumb' file merge. ...
written 5 months ago by BioApps680
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Answer: A: how to convert a long fasta-file into many separate single fasta sequences
... This tool I built will [split a multiFasta, SFF, FastQ file][1] in individual OR smaller-block fasta files. The tool works also on Linux via WinE without any drawbacks. It can also convert between different formats and do sequence processing as FastQC. ![split mutiple fasta to single/indiviual fas ...
written 5 months ago by BioApps680
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Comment: C: Converting A Dna Sequence To Abi Or Scf Format
... Which format (file extension) do you have? ...
written 10 months ago by BioApps680
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Comment: C: merge large amount of fastq files into a single one
... Those with Windows can use this GUI tool (works also on Linux via wine): http://www.dnabaser.com/download/Merge%20Fasta/index.html ...
written 13 months ago by BioApps680
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Comment: C: Are There Any Substitutes For Sequencher By Gene Codes?
... DNA Baser 64bit to be released soon. This will greatly improve the max contig length. ...
written 14 months ago by BioApps680
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Comment: C: Are There Any Substitutes For Sequencher By Gene Codes?
... Some (most) of the tools (like sequence visualizers) are free also permanently in DNA Baser Assembler. Basically all features are unlocked until the trial expires. Upon expiration some tools will not save the data (the contig for example) anymore. However, DNA Baser cannot handle very long sequences ...
written 14 months ago by BioApps680
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Comment: C: Are There Any Substitutes For Sequencher By Gene Codes?
... Since you mention a program that has GUI I guess you want only GUI programs enumerated. And since you mention 'alternative to...' I guess you want cheaper/free programs enumerated. ...
written 15 months ago by BioApps680
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Answer: A: Are There Any Substitutes For Sequencher By Gene Codes?
... **DNA Baser Sequence Assembler** URL= [www.dnabaser.com][1] Platforms= Windows (all) Version Number= 4.36 Owned by= Heracle BioSoft SRL (I work there) License type = commercial (Basic license: **400 euros** for academic users. All included (support, updates)) Source Code = Nope Da ...
written 15 months ago by BioApps680
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Answer: A: Looking For A Good Open Source Command-Line Sanger Sequence Pairwise Assembler
... [Here][1] is one that is NOT freeware but it meets all other conditions of yours: - easy to use (non-overkill) - up to date - works on million of samples (your script only needs to provide the folders where your samples are) This script demonstrates how easy it is to use: BaserConsole.exe ...
written 17 months ago by BioApps680

Latest awards to BioApps

Appreciated 13 months ago, created a post with more than 5 votes. For A: Crac: Funny And/Or Weird Names For Bioinformatics Tools
Supporter 13 months ago, voted at least 25 times.
Commentator 20 months ago, created a comment with at least 3 up-votes. For C: Sequence Dereplicator (GUI)
Good Answer 22 months ago, created an answer that was upvoted at least 5 times. For A: Crac: Funny And/Or Weird Names For Bioinformatics Tools
Teacher 2.9 years ago, created an answer with at least 3 up-votes. For A: Crac: Funny And/Or Weird Names For Bioinformatics Tools
Autobiographer 3.2 years ago, has more than 80 characters in the information field of the user's profile.
Appreciated 3.3 years ago, created a post with more than 5 votes. For Efficiently parsing and viewing a large fastq file

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