User: BioApps

gravatar for BioApps
BioApps720
Reputation:
720
Status:
Trusted
Location:
Spain
Last seen:
2 weeks, 4 days ago
Joined:
4 years, 6 months ago
Email:
c******@dnabaser.com

Scientific interests:

- Microbial viruses

- Super-resolution microscopy in environmental microbiology

- Single gene detection in microorganisms by Fluorescence In Situ Hybridization (FISH) - development of geneFISH and of a probe design concept and software for polynucleotide probes

- Development of bioinformatics software for polynucleotide probe design and sequence analysis

 

Posts by BioApps

<prev • 95 results • page 1 of 10 • next >
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Answer: A: Converting Ab1 Trace Files Into Scf Trace Files
... DNA Baser Assembler can convert between several formats including ABI to SCF. If it doesn't install you have some kind of overzealous antivirus overreacting. Here is a RAR package that you DON'T have to install: [http://www.dnabaser.com/download/Biology-tools-package.rar][1] Just extract ...
written 18 days ago by BioApps720
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Comment: C: Converting Ab1 Trace Files Into Scf Trace Files
... 4 programs and none works? There must be something wrong with your computer :) ...
written 18 days ago by BioApps720
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Comment: A: DNA Baser alternative
... DNA Baser v4 actually CAN save the contig to disk, even in trial period (so, this also answers the 3rd question: it does have a trial period). ...
written 18 months ago by BioApps720
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Comment: C: merge large amount of fastq files into a single one
... Nice solution. Yes. Basically you need to do a 'dumb' file merge. ...
written 20 months ago by BioApps720
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Answer: A: how to convert a long fasta-file into many separate single fasta sequences
... This tool I built will [split a multiFasta, SFF, FastQ file][1] in individual OR smaller-block fasta files. The tool works also on Linux via WinE without any drawbacks. It can also convert between different formats and do sequence processing as FastQC. ![split mutiple fasta to single/indiviual fas ...
written 20 months ago by BioApps720
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Comment: C: Converting A Dna Sequence To Abi Or Scf Format
... Which format (file extension) do you have? ...
written 2.1 years ago by BioApps720
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Comment: C: merge large amount of fastq files into a single one
... Those with Windows can use this GUI tool (works also on Linux via wine): http://www.dnabaser.com/download/Merge%20Fasta/index.html ...
written 2.3 years ago by BioApps720
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Comment: C: Are There Any Substitutes For Sequencher By Gene Codes?
... DNA Baser 64bit to be released soon. This will greatly improve the max contig length. ...
written 2.4 years ago by BioApps720
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Comment: C: Are There Any Substitutes For Sequencher By Gene Codes?
... Some (most) of the tools (like sequence visualizers) are free also permanently in DNA Baser Assembler. Basically all features are unlocked until the trial expires. Upon expiration some tools will not save the data (the contig for example) anymore. However, DNA Baser cannot handle very long sequences ...
written 2.4 years ago by BioApps720
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Comment: C: Are There Any Substitutes For Sequencher By Gene Codes?
... Since you mention a program that has GUI I guess you want only GUI programs enumerated. And since you mention 'alternative to...' I guess you want cheaper/free programs enumerated. ...
written 2.5 years ago by BioApps720

Latest awards to BioApps

Popular Question 18 months ago, created a question with more than 1,000 views. For What size should I expect from a SFF file?
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Crac: Funny And/Or Weird Names For Bioinformatics Tools
Appreciated 2.3 years ago, created a post with more than 5 votes. For A: Crac: Funny And/Or Weird Names For Bioinformatics Tools
Supporter 2.3 years ago, voted at least 25 times.
Commentator 2.9 years ago, created a comment with at least 3 up-votes. For C: Sequence Dereplicator (GUI)
Good Answer 3.1 years ago, created an answer that was upvoted at least 5 times. For A: Crac: Funny And/Or Weird Names For Bioinformatics Tools
Teacher 4.1 years ago, created an answer with at least 3 up-votes. For A: Crac: Funny And/Or Weird Names For Bioinformatics Tools
Autobiographer 4.5 years ago, has more than 80 characters in the information field of the user's profile.
Appreciated 4.5 years ago, created a post with more than 5 votes. For Efficiently parsing and viewing a large fastq file

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