User: Eslam Samir

gravatar for Eslam Samir
Eslam Samir90
Reputation:
90
Status:
Trusted
Location:
Egypt / Cairo / Microbiology & Immunology Department
Last seen:
2 days, 14 hours ago
Joined:
4 years ago
Email:
i**************@gmail.com

Posts by Eslam Samir

<prev • 23 results • page 1 of 3 • next >
1
vote
0
answers
78
views
0
answers
Tool: Reverse Translator by Codon Usage (RTCU)
... # Reverse Translator by Codon Usage (RTCU) The program uses the codon usage preference of your choice to reverse translate a protein sequence Here is the repository: https://github.com/Eslam-Samir-Ragab/RTCU ## How to use: 1. you need to install [python 2.7](https://www.python.org/downloads/) or [ ...
sequence tool written 16 days ago by Eslam Samir90
0
votes
2
answers
689
views
2
answers
Comment: C: Sequence Dereplication and Database Curator Program (SDDC)
... Thank you so much for your comment. *For the option of counting sequences*, it can be detected but in indirect way. Please, check the [**SDDC Cheat sheet**][1]. This point is covered in page 2 (grey box). *For the partial (fragmented) sequences*, I tested the program against a synthetic database a ...
written 10 weeks ago by Eslam Samir90
0
votes
2
answers
689
views
2
answers
Answer: A: Sequence Dereplication and Database Curator Program (SDDC)
... Thank you so much for your comment. *For the option of counting sequences*, it can be detected but in indirect way. Please, check the [**SDDC Cheat sheet**][1]. This point is covered in page 2 (grey box). *For the partial (fragmented) sequences*, I tested the program against a synthetic database a ...
written 10 weeks ago by Eslam Samir90
0
votes
2
answers
362
views
2
answers
Answer: A: how to extract protein info for a bunch of IDs
... Here is my free program on Github **SDDC** (https://github.com/Eslam-Samir-Ragab/Sequence-database-curator) It is a very fast program and it can deal with: 1. Nucleotide sequences 2. Protein sequences It can work under Operating systems: 1. Windows 2. Mac 3. Linux It also works for: 1. ...
written 9 months ago by Eslam Samir90
0
votes
0
answers
735
views
0
answers
Comment: C: Sequence filtration tool
... Dr @Brian, Thanks for clearing some of the defects of the previous tool. Here is the next release https://www.biostars.org/p/243544/ I hope it will be satisfactory for this job to move for more realistic problems :) . ...
written 13 months ago by Eslam Samir90
1
vote
0
answers
735
views
0
answers
Comment: C: Sequence filtration tool
... Dr @John Thanks a lot for all of this precious advice. I'm now working on something that I hope it will have better impact than this simple idea :) ...
written 13 months ago by Eslam Samir90
1
vote
2
answers
689
views
2
answers
Tool: Sequence Dereplication and Database Curator Program (SDDC)
... ### Sequence Dereplication and Database Curator Program (SDDC) https://github.com/Eslam-Samir-Ragab/Sequence-database-curator/blob/master/sddc.py This program can : dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match). ## How to use: 1. ...
proteomics metagenomics genetics tool genomics written 13 months ago by Eslam Samir90
8
votes
0
answers
735
views
0
answers
Tool: Sequence filtration tool
... # Sequence filteration Program **Sequence database curator** (https://github.com/Eslam-Samir-Ragab/Sequence-database-curator) This program can filter nucleotide and/or protein database from a list of names or sequences (by exact match). ## Input: File containing all the sequences in FASTA format. ...
fasta filter sequence tool written 13 months ago by Eslam Samir90
0
votes
4
answers
1.7k
views
4
answers
Answer: A: Removing redundant sequences
... Here is my free program on Github **Sequence database curator** (https://github.com/Eslam-Samir-Ragab/Sequence-database-curator) It is a very fast program and it can deal with: 1. Nucleotide sequences 2. Protein sequences It can work under Operating systems: 1. Windows 2. Mac 3. Linux It ...
written 14 months ago by Eslam Samir90
0
votes
3
answers
2.3k
views
3
answers
Answer: A: Removing Redundant Amino Acid Sequences From Fasta - *But Also Give The Groups O
... Here is my free program on Github **Sequence database curator** (https://github.com/Eslam-Samir-Ragab/Sequence-database-curator) It is a very fast program and it can deal with: 1. Nucleotide sequences 2. Protein sequences It can work under Operating systems: 1. Windows 2. Mac 3. Linux It ...
written 14 months ago by Eslam Samir90

Latest awards to Eslam Samir

Popular Question 3.6 years ago, created a question with more than 1,000 views. For How to start Bioinformatics ?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1049 users visited in the last hour