User: Eslam Samir

gravatar for Eslam Samir
Eslam Samir100
Reputation:
100
Status:
Trusted
Location:
Egypt / Cairo / Microbiology & Immunology Department
Last seen:
1 month, 3 weeks ago
Joined:
4 years, 2 months ago
Email:
i**************@gmail.com

Posts by Eslam Samir

<prev • 23 results • page 1 of 3 • next >
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Tool: Reverse Translator by Codon Usage (RTCU)
... # Reverse Translator by Codon Usage (RTCU) The program uses the codon usage preference of your choice to reverse translate a protein sequence Here is the repository: https://github.com/Eslam-Samir-Ragab/RTCU ## How to use: 1. you need to install [python 2.7](https://www.python.org/downloads/) or [ ...
sequence tool written 3 months ago by Eslam Samir100
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Comment: C: Sequence Dereplication and Database Curator Program (SDDC)
... Thank you so much for your comment. *For the option of counting sequences*, it can be detected but in indirect way. Please, check the [**SDDC Cheat sheet**][1]. This point is covered in page 2 (grey box). *For the partial (fragmented) sequences*, I tested the program against a synthetic database a ...
written 5 months ago by Eslam Samir100
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Answer: A: Sequence Dereplication and Database Curator Program (SDDC)
... Thank you so much for your comment. *For the option of counting sequences*, it can be detected but in indirect way. Please, check the [**SDDC Cheat sheet**][1]. This point is covered in page 2 (grey box). *For the partial (fragmented) sequences*, I tested the program against a synthetic database a ...
written 5 months ago by Eslam Samir100
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Answer: A: how to extract protein info for a bunch of IDs
... Here is my free program on Github **SDDC** (https://github.com/Eslam-Samir-Ragab/Sequence-database-curator) It is a very fast program and it can deal with: 1. Nucleotide sequences 2. Protein sequences It can work under Operating systems: 1. Windows 2. Mac 3. Linux It also works for: 1. ...
written 12 months ago by Eslam Samir100
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Comment: C: Sequence filtration tool
... Dr @Brian, Thanks for clearing some of the defects of the previous tool. Here is the next release https://www.biostars.org/p/243544/ I hope it will be satisfactory for this job to move for more realistic problems :) . ...
written 16 months ago by Eslam Samir100
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Comment: C: Sequence filtration tool
... Dr @John Thanks a lot for all of this precious advice. I'm now working on something that I hope it will have better impact than this simple idea :) ...
written 16 months ago by Eslam Samir100
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Tool: Sequence Dereplication and Database Curator Program (SDDC) v2.0
... ### Sequence Dereplication and Database Curator Program (SDDC) https://github.com/Eslam-Samir-Ragab/Sequence-database-curator/releases/tag/v2.0 This program can : dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match). **Version 2.0 Updates ...
proteomics metagenomics genetics tool genomics written 16 months ago by Eslam Samir100
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Tool: Sequence filtration tool
... # Sequence filteration Program **Sequence database curator** (https://github.com/Eslam-Samir-Ragab/Sequence-database-curator) This program can filter nucleotide and/or protein database from a list of names or sequences (by exact match). ## Input: File containing all the sequences in FASTA format. ...
fasta filter sequence tool written 16 months ago by Eslam Samir100
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Answer: A: Removing redundant sequences
... Here is my free program on Github **Sequence database curator** (https://github.com/Eslam-Samir-Ragab/Sequence-database-curator) It is a very fast program and it can deal with: 1. Nucleotide sequences 2. Protein sequences It can work under Operating systems: 1. Windows 2. Mac 3. Linux It ...
written 17 months ago by Eslam Samir100
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Answer: A: Removing Redundant Amino Acid Sequences From Fasta - *But Also Give The Groups O
... Here is my free program on Github **Sequence database curator** (https://github.com/Eslam-Samir-Ragab/Sequence-database-curator) It is a very fast program and it can deal with: 1. Nucleotide sequences 2. Protein sequences It can work under Operating systems: 1. Windows 2. Mac 3. Linux It ...
written 17 months ago by Eslam Samir100

Latest awards to Eslam Samir

Popular Question 8 weeks ago, created a question with more than 1,000 views. For How to start Bioinformatics ?
Popular Question 3.8 years ago, created a question with more than 1,000 views. For How to start Bioinformatics ?

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