User: mahnazkiani

gravatar for mahnazkiani
mahnazkiani40
Reputation:
40
Status:
New User
Location:
United States
Last seen:
2 weeks ago
Joined:
5 years, 1 month ago
Email:
m**********@gmail.com

Posts by mahnazkiani

<prev • 23 results • page 1 of 3 • next >
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Comment: C: GBS or RAD?
... Thank you for your response. Populations have been established from the wild populations 3 years before and increased and kept in the separated cages in the greenhouse. We don't expect migration between populations. Do you still think that we need to go to crossing before doing genotyping? ...
written 9 months ago by mahnazkiani40
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GBS or RAD?
... I am interested in using either RAD or GBS method to find the variations between 1 population of susceptible insect and 3 population of resistant insect. The insect genome has not sequenced yet, but I assume that the genome size would be about 400-500 MB. How many samples from each population I need ...
genome snp sequencing written 9 months ago by mahnazkiani40
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Comment: C: Characterization of the insecticide resitance mechanism
... Thank you for your comment, but the problem is that the insect genome has not sequenced yet. Mahnaz ...
written 10 months ago by mahnazkiani40
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Characterization of the insecticide resitance mechanism
... Hello, I have a question about investigating insecticide ( Neonicoitnoids) resistance mechanism. We have populations of insects that are resistant and susceptible to insecticide, and we are interested to find out about the mechanism behind it. Any recommendation that how we can do it? Looking for ...
snp written 10 months ago by mahnazkiani40
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Tophat running error
... Hello, I'm trying to run tophat and I'm getting the following error that I don't know how to fix it. Appreciate any help. [2018-05-11 11:14:58] Checking for Bowtie Bowtie version: 2.2.9.0 [2018-05-11 11:14:58] Checking for Bowtie index files (genome).. [201 ...
tophat rna-seq written 13 months ago by mahnazkiani40 • updated 13 months ago by genomax68k
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Finding ortholog genes
... I have a question, I need to find the ortholog genes for the gene list that I have for the sorghum. I have my gene list, annotation file for sorghum that can be used for finding the arabidopsis orthologs and also zea_mays annaotation file that can be used next for finding the ortologs of arabidopsi ...
R rna-seq written 20 months ago by mahnazkiani40 • updated 20 months ago by fishgolden390
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De novo assembly and marker development for insecticide resistance
... Hello, I have a question for designing the experiment, I am interested to design markers for insecticide resistance in an insect that its genome has not been sequenced. I am thinking to sequence the genome, do de novo assembly and then look for variants between tolerant and control insect. Is this ...
next-gen sequencing written 21 months ago by mahnazkiani40 • updated 21 months ago by h.mon26k
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Comment: C: Differential Gene expression analysis with two factors
... Just wondering that does it makes sense to get DEGs from two genotypes and then use venn diagram to find similar DEGs in two genotypes and go through functional analysis after that? ...
written 22 months ago by mahnazkiani40
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Differential Gene expression analysis with two factors
... Hi, I have a question about RNA-seq data analysis, I have two genotypes and 3 sampling from a different part of the plant in each genotype. I want to analyze both genotypes together using factor analysis with a genotype: stage interaction term. How I can do that? Can I use edgeR? Appreciate your h ...
rna-seq written 22 months ago by mahnazkiani40 • updated 22 months ago by Devon Ryan90k
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Comment: C: Designing the RNA-seq for plant-insect interaction
... Thank you for your comment, I have two plant genotypes, one is resistant to insect and the other one is susceptible, I want to compare the gene expression of those two plants. The plants in the pots should be uniform because they are hybrid seed. Do you still think that is better to not have techni ...
written 2.1 years ago by mahnazkiani40

Latest awards to mahnazkiani

Popular Question 20 months ago, created a question with more than 1,000 views. For Network analysis-next step after calculating correlation in R
Student 20 months ago, asked a question with at least 3 up-votes. For Network analysis software
Popular Question 21 months ago, created a question with more than 1,000 views. For Network analysis-next step after calculating correlation in R
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Network analysis-next step after calculating correlation in R
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Do or not doing the Co-expression data analysis?
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Network analysis software
Popular Question 3.8 years ago, created a question with more than 1,000 views. For Network analysis software

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