User: slcrick
slcrick • 90
- Reputation:
- 90
- Status:
- Trusted
- Location:
- United States
- Website:
- http://www.insilico.us...
- Last seen:
- 2 weeks ago
- Joined:
- 4 years, 9 months ago
- Email:
- r***@insilico.us.com
Posts by slcrick
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... [open-cravat 1.3.2][1] has been released. This version has the following updates:
**Updates on Interactive Result Viewer (cravat-view):**
- Data loading indicator
- Local filter select box
- Show-all and hide-all buttons for widgets
- Load filter of cravat-view now has two modes, simple and a ...
written 14 days ago by
slcrick • 90
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... [open-cravat][1] is an open-source platform for rapidly developing, using, and disseminating variant annotation tools.
It can handle unlimited number of variants in VCF format input files as well as its own input format and produce tab-separated text output files and excel spreadsheets. It is comma ...
written 9 weeks ago by
slcrick • 90
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Comment:
C: tools for variant annotations
... Thanks. I'll try it! ...
written 9 weeks ago by
slcrick • 90
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... Yes, sorry I am still new to Biostars and thought that if it might be prohibited to include a link to the software with which a commenter himself/herself is involved. ...
written 9 weeks ago by
slcrick • 90
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Comment:
C: tools for variant annotations
... Yes, sorry I am still new to Biostars and thought that if it might be prohibited to include a link to the software with which a commenter himself/herself is involved. ...
written 9 weeks ago by
slcrick • 90
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Answer:
A: tools for variant annotations
... open-cravat handles VCF input file format. Disclosure: I am the lead architect of open-cravat. ...
written 9 weeks ago by
slcrick • 90
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... open-cravat can handle unlimited number of variants. It can consume VCF format input files and produce tab-separated text output files as well as excel spreadsheets. It has visualization components which is still being polished but its command-line portion is quite solid. It is modular and open-sour ...
written 9 weeks ago by
slcrick • 90
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... Hi, a structure viewer for Ebola virus proteins has been developed, so I'd like to share and also get opinions and suggestions for improvement. It's at http://mupit-ebola.icm.jhu.edu. It was developed by the laboratory of Dr. Rachel Karchin at Johns Hopkins University (website) and In Silico Solutio ...
written 4.3 years ago by
slcrick • 90
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... Hi Chetan,
I looked at your perl script. The classifier name should be "Head-and-Neck" (as shown in http://www.cravat.us) instead of "Head and Neck" and I could run the script only by removing the proxy setup command.
Rick
...
written 4.8 years ago by
slcrick • 90
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... Hi, this is Rick from In Silico Solutions, which maintains CRAVAT. Please see the following examples in Perl:
use LWP;
use URI;
my $browser = LWP::UserAgent->new();
#
# Job submission example, when the mutations are in a string
#
print "\n###### Submitting t ...
Latest awards to slcrick
Popular Question
4.3 years ago,
created a question with more than 1,000 views.
For Structure viewer for Ebola virus proteins
Teacher
4.8 years ago,
created an answer with at least 3 up-votes.
For A: cravat.us web services, unable to understand what to do
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