User: slcrick

gravatar for slcrick
slcrick90
Reputation:
90
Status:
Trusted
Location:
United States
Website:
http://www.insilico.us...
Last seen:
2 weeks ago
Joined:
4 years, 9 months ago
Email:
r***@insilico.us.com

Posts by slcrick

<prev • 10 results • page 1 of 1 • next >
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Answer: A: open-cravat: variant annotation tool
... [open-cravat 1.3.2][1] has been released. This version has the following updates: **Updates on Interactive Result Viewer (cravat-view):** - Data loading indicator - Local filter select box - Show-all and hide-all buttons for widgets - Load filter of cravat-view now has two modes, simple and a ...
written 14 days ago by slcrick90
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Tool: open-cravat: variant annotation tool
... [open-cravat][1] is an open-source platform for rapidly developing, using, and disseminating variant annotation tools. It can handle unlimited number of variants in VCF format input files as well as its own input format and produce tab-separated text output files and excel spreadsheets. It is comma ...
tool open-cravat written 9 weeks ago by slcrick90
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Comment: C: tools for variant annotations
... Thanks. I'll try it! ...
written 9 weeks ago by slcrick90
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Comment: C: Variant Annotation Integrator From Ucsc
... Yes, sorry I am still new to Biostars and thought that if it might be prohibited to include a link to the software with which a commenter himself/herself is involved. ...
written 9 weeks ago by slcrick90
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Comment: C: tools for variant annotations
... Yes, sorry I am still new to Biostars and thought that if it might be prohibited to include a link to the software with which a commenter himself/herself is involved. ...
written 9 weeks ago by slcrick90
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Answer: A: tools for variant annotations
... open-cravat handles VCF input file format. Disclosure: I am the lead architect of open-cravat. ...
written 9 weeks ago by slcrick90
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Answer: A: Variant Annotation Integrator From Ucsc
... open-cravat can handle unlimited number of variants. It can consume VCF format input files and produce tab-separated text output files as well as excel spreadsheets. It has visualization components which is still being polished but its command-line portion is quite solid. It is modular and open-sour ...
written 9 weeks ago by slcrick90
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News: Structure viewer for Ebola virus proteins
... Hi, a structure viewer for Ebola virus proteins has been developed, so I'd like to share and also get opinions and suggestions for improvement. It's at http://mupit-ebola.icm.jhu.edu. It was developed by the laboratory of Dr. Rachel Karchin at Johns Hopkins University (website) and In Silico Solutio ...
viewer news structure ebola written 4.3 years ago by slcrick90
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Comment: C: cravat.us web services, unable to understand what to do
... Hi Chetan, I looked at your perl script. The classifier name should be "Head-and-Neck" (as shown in http://www.cravat.us) instead of "Head and Neck" and I could run the script only by removing the proxy setup command. Rick ...
written 4.8 years ago by slcrick90
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Answer: A: cravat.us web services, unable to understand what to do
... Hi, this is Rick from In Silico Solutions, which maintains CRAVAT. Please see the following examples in Perl: use LWP; use URI; my $browser = LWP::UserAgent->new(); # # Job submission example, when the mutations are in a string # print "\n###### Submitting t ...
written 4.8 years ago by slcrick90 • updated 5 months ago by RamRS20k

Latest awards to slcrick

Popular Question 4.3 years ago, created a question with more than 1,000 views. For Structure viewer for Ebola virus proteins
Teacher 4.8 years ago, created an answer with at least 3 up-votes. For A: cravat.us web services, unable to understand what to do

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