User: slcrick

gravatar for slcrick
slcrick240
Reputation:
240
Status:
Trusted
Location:
United States
Website:
http://www.insilico.us...
Last seen:
4 months ago
Joined:
6 years, 5 months ago
Email:
r***@insilico.us.com

Lead architect of OpenCRAVAT and CRAVAT

Posts by slcrick

<prev • 18 results • page 1 of 2 • next >
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Comment: C: Get clinVar info for SNP with VEP
... Thanks. In OpenCRAVAT (OC) 1.8.0, if multiple annotators are requested to be run, they can be run on multiple cores, but still one annotator will be run on one core. And, other steps such as aggregator are run on one core. OC started as a single core program and we have been adding multicore support ...
written 4 months ago by slcrick240
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Comment: C: Get clinVar info for SNP with VEP
... Please run `oc module install wgcodingvsnoncodingsummary` to install the fixed version of the widget and see if the problem is gone. ...
written 4 months ago by slcrick240
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Comment: C: Get clinVar info for SNP with VEP
... Hi, a lead architect of OpenCRAVAT here. It's a bug in "Coding vs Noncoding Summary" widget. Sequence ontology terms have been evolving and the widget did not catch up with the change. We'll fix it and publish a fixed version shortly. ...
written 4 months ago by slcrick240
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Comment: C: open-cravat: variant annotation tool
... Yes, you can install OpenCRAVAT and install the annotation modules of your interest, and go to the /data folder of the modules and examine the databases manually with sqlite3. If you need more help, let me know. ...
written 7 months ago by slcrick240
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Answer: A: CRAVAT: a web tool to annotate and analyze cancer variants
... There is currently no limit for VCF files on cravat.us. Only uncompressed VCF files are supported. By the way, there is a new evolved version of CRAVAT. Check out OpenCRAVAT at run.opencravat.org (Web server) and https://github.com/KarchinLab/open-cravat/wiki (stand-alone version). ...
written 7 months ago by slcrick240
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Answer: A: open-cravat: variant annotation tool
... [OpenCRAVAT 1.5.1][1] has been released, which has the following updates. **cravat core** - cravat-admin info shows data source version for each module version, if available, as well as the current version. - cravat options changed: --startat for setting the starting stage, --endat for setting the ...
written 13 months ago by slcrick240
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Answer: A: CHASMplus Async RuntimeWarning and Blank Results File
... Sorry there was a text reporter version with a bug. If you install the newest version of textreporter, that error will go away. ...
written 13 months ago by slcrick240
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Answer: A: open-cravat: variant annotation tool
... [open-cravat 1.4.5][1] has been released. This version has the following updates (since 1.3.2): #1.4.5 July 16, 2019 - Fix for bug preventing submission of multiple input files. #1.4.4 June 17, 2019 **Installers** - The Mac installer is now a signed package installer. **cravat core** - In Win ...
written 14 months ago by slcrick240
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Answer: A: open-cravat: variant annotation tool
... [open-cravat 1.3.2][1] has been released. This version has the following updates: **Updates on Interactive Result Viewer (cravat-view):** - Data loading indicator - Local filter select box - Show-all and hide-all buttons for widgets - Load filter of cravat-view now has two modes, simple and a ...
written 20 months ago by slcrick240
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Tool: open-cravat: variant annotation tool
... [open-cravat][1] is an open-source platform for rapidly developing, using, and disseminating variant annotation tools. It can handle unlimited number of variants in VCF format input files as well as its own input format and produce tab-separated text output files and excel spreadsheets. It is comma ...
tool open-cravat written 21 months ago by slcrick240

Latest awards to slcrick

Popular Question 6 months ago, created a question with more than 1,000 views. For Structure viewer for Ebola virus proteins
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: cravat.us web services, unable to understand what to do
Scholar 13 months ago, created an answer that has been accepted. For A: CHASMplus Async RuntimeWarning and Blank Results File
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: cravat.us web services, unable to understand what to do
Appreciated 14 months ago, created a post with more than 5 votes. For open-cravat: variant annotation tool
Popular Question 5.9 years ago, created a question with more than 1,000 views. For Structure viewer for Ebola virus proteins
Teacher 6.4 years ago, created an answer with at least 3 up-votes. For A: cravat.us web services, unable to understand what to do

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