User: russhh

gravatar for russhh
russhh4.2k
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UK, U. Glasgow
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@haematobot
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Bioinformatics etc of leukaemia at University of Glasgow
 

Posts by russhh

<prev • 632 results • page 1 of 64 • next >
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Comment: C: How to combine count matrix with mouse gene information from Ensemble using Biom
... If you want to store meta-data for your genes alongside read-counts for those features in your samples, you might be better storing your data in a `edgeR::DGEList`. ...
written 7 days ago by russhh4.2k
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Comment: C: Remove batch effects in meta-analysis
... Cool. Can I suggest that you avoid using `all` as a variable name, since it is a base-R function name ...
written 13 days ago by russhh4.2k
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Comment: C: Remove batch effects in meta-analysis
... Looks like you've passed in a data-frame to a function that expected a matrix. Could you check the class of `all`. ...
written 13 days ago by russhh4.2k
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Comment: C: Pearson Correlation Issue
... `cor(x = all_genes, y = my_gene, method = "spearman")` ...
written 20 days ago by russhh4.2k
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Comment: C: are my results what they are supposed to look like?
... you're using lasso. It will strive to both fit the data and keep the coefficients small. The balance of these two forces is influencing the coefficients that are fitted. ...
written 4 weeks ago by russhh4.2k
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Comment: C: Correlation Matrix - Big Data - R
... are you clustering the genes or the samples? ...
written 4 weeks ago by russhh4.2k
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Comment: C: Conference news: Final list of speakers for DataTech19, Scotland's data science
... URL: [https://www.datafest.global/data-tech/][1] [1]: https://www.datafest.global/data-tech/ ...
written 4 weeks ago by russhh4.2k
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Comment: C: edgeR make contrast
... Were they clustered using one subset of the genes, and now you're running diffex on a separate subset of the genes? ...
written 5 weeks ago by russhh4.2k
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Comment: C: edgeR make contrast
... I don't mean to pry, but you couldn't give us a bit more detail about the actual study could you? It may simply be that your collaborators have made a mistake in explaining what they want you to compare - they may be asking you to compare expression in the set A against expression in the set A u B, ...
written 5 weeks ago by russhh4.2k
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Comment: C: edgeR make contrast
... isn't A versus B+A just a contrast on B-versus-zero? All you'll get is a summary of average expression ...
written 5 weeks ago by russhh4.2k

Latest awards to russhh

Commentator 5 weeks ago, created a comment with at least 3 up-votes. For C: fisher test with multiple samples
Good Answer 6 weeks ago, created an answer that was upvoted at least 5 times. For A: R survival analysis
Good Answer 3 months ago, created an answer that was upvoted at least 5 times. For A: R survival analysis
Scholar 3 months ago, created an answer that has been accepted. For C: muTect analysis, error
Popular Question 3 months ago, created a question with more than 1,000 views. For Has the RNA-Seq Atlas website closed?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Unexpected outcome: Gene Enrichment using Fisher's Test
Scholar 4 months ago, created an answer that has been accepted. For C: muTect analysis, error
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Unexpected outcome: Gene Enrichment using Fisher's Test
Scholar 5 months ago, created an answer that has been accepted. For C: muTect analysis, error
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Unexpected outcome: Gene Enrichment using Fisher's Test
Scholar 5 months ago, created an answer that has been accepted. For C: muTect analysis, error
Appreciated 6 months ago, created a post with more than 5 votes. For C: Venn/Euler Diagram Of Four Or More Sets
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Unexpected outcome: Gene Enrichment using Fisher's Test
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Unexpected outcome: Gene Enrichment using Fisher's Test
Appreciated 7 months ago, created a post with more than 5 votes. For C: Venn/Euler Diagram Of Four Or More Sets
Appreciated 10 months ago, created a post with more than 5 votes. For C: Venn/Euler Diagram Of Four Or More Sets
Scholar 10 months ago, created an answer that has been accepted. For C: muTect analysis, error
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Unexpected outcome: Gene Enrichment using Fisher's Test
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: fisher test with multiple samples
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: fisher test with multiple samples
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Unexpected outcome: Gene Enrichment using Fisher's Test
Scholar 11 months ago, created an answer that has been accepted. For C: muTect analysis, error
Popular Question 13 months ago, created a question with more than 1,000 views. For Has the RNA-Seq Atlas website closed?
Popular Question 15 months ago, created a question with more than 1,000 views. For VariantAnnotation parallel usage
Good Answer 15 months ago, created an answer that was upvoted at least 5 times. For A: R survival analysis

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