User: russhh

gravatar for russhh
russhh2.8k
Reputation:
2,820
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Location:
UK, U. Glasgow
Twitter:
@haematobot
Last seen:
8 hours ago
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3 years, 8 months ago
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Bioinformatics etc of leukaemia at University of Glasgow
 

Posts by russhh

<prev • 434 results • page 1 of 44 • next >
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Comment: C: easy column rename with stringr
... This is neither a tutorial nor a question at present. ...
written 2 days ago by russhh2.8k
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Answer: A: enrichment of transcription factors
... If it's human or mouse, you could try using [this][1] [1]: http://encodeqt.simple-encode.org/ ...
written 6 days ago by russhh2.8k
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Comment: C: Multiple linear regression with gene labelling
... There only appears to be two columns of data, to talk of multiple regression doesn't make a lot of sense to me ...
written 8 days ago by russhh2.8k
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Comment: C: Deseq2: 3 factors design
... the actual design matrix. From the description in the first post you've got 2^3 = 8 treatments. Please. The actual design matrix ...
written 4 weeks ago by russhh2.8k
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Comment: C: Deseq2: 3 factors design
... could you post the contents of your design matrix ...
written 5 weeks ago by russhh2.8k
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Comment: C: microarray data analysis
... In what way did it fail, and what have you done to work out why it failed? Here's a brusque tutorial I wrote: [here][1] [1]: http://biolearnr.blogspot.co.uk/2017/02/start-playing-with-r-and-bioconductor.html ...
written 5 weeks ago by russhh2.8k
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Comment: C: microarray data analysis
... Based on your text above, the threshold should be 0.05. Can I *strongly suggest* that you read and work through the limma user's guide rather than doing the unmoderated t-tests that you've proposed. And by strongly suggest, I mean, *really strongly suggest*. ...
written 5 weeks ago by russhh2.8k
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Comment: C: error bar in boxplot ggplot2
... If you're going to add error bars (rather than present the empirical data quantiles and outliers of a box plot), could you refrain from calling it a box plot. ...
written 5 weeks ago by russhh2.8k
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Comment: C: Data sets suitable for analysing gene expression
... use all the samples that are available. ...
written 5 weeks ago by russhh2.8k
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Comment: C: Multiple Conditions Testing in DESeq2 with unequal number of replicates
... So really your experiment is designed like this: set condition cellline treated1 treated1 treated 1 control1 control1 control 1 treated2.1 treated2 treated 2 treated3.1 treated3 treated 3 treated3.2 treated3 treated 3 ...
written 6 weeks ago by russhh2.8k

Latest awards to russhh

Popular Question 28 days ago, created a question with more than 1,000 views. For VariantAnnotation parallel usage
Good Answer 5 weeks ago, created an answer that was upvoted at least 5 times. For A: R survival analysis
Appreciated 5 weeks ago, created a post with more than 5 votes. For C: Venn/Euler Diagram Of Four Or More Sets
Commentator 5 weeks ago, created a comment with at least 3 up-votes. For C: fisher test with multiple samples
Scholar 10 weeks ago, created an answer that has been accepted. For C: muTect analysis, error
Appreciated 12 weeks ago, created a post with more than 5 votes. For C: Venn/Euler Diagram Of Four Or More Sets
Good Answer 3 months ago, created an answer that was upvoted at least 5 times. For A: R survival analysis
Scholar 3 months ago, created an answer that has been accepted. For C: muTect analysis, error
Scholar 4 months ago, created an answer that has been accepted. For C: muTect analysis, error
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Unexpected outcome: Gene Enrichment using Fisher's Test
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Unexpected outcome: Gene Enrichment using Fisher's Test
Appreciated 6 months ago, created a post with more than 5 votes. For C: Venn/Euler Diagram Of Four Or More Sets
Scholar 6 months ago, created an answer that has been accepted. For C: muTect analysis, error
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Unexpected outcome: Gene Enrichment using Fisher's Test
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: fisher test with multiple samples
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: fisher test with multiple samples
Scholar 7 months ago, created an answer that has been accepted. For C: muTect analysis, error
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Unexpected outcome: Gene Enrichment using Fisher's Test
Scholar 8 months ago, created an answer that has been accepted. For C: muTect analysis, error
Scholar 8 months ago, created an answer that has been accepted. For A: scripting problem to use ProtComp output to identify secretome proteins
Pundit 10 months ago, created a comment with more than 10 votes. For C: What Are The Most Common Stupid Mistakes In Bioinformatics?
Commentator 10 months ago, created a comment with at least 3 up-votes. For C: fisher test with multiple samples
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Unexpected outcome: Gene Enrichment using Fisher's Test
Scholar 10 months ago, created an answer that has been accepted. For A: scripting problem to use ProtComp output to identify secretome proteins
Good Answer 13 months ago, created an answer that was upvoted at least 5 times. For A: R survival analysis

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