User: Daniel
Daniel • 3.4k
- Reputation:
- 3,430
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- Location:
- Cardiff University
- Last seen:
- 18 hours ago
- Joined:
- 6 years, 7 months ago
- Email:
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Posts by Daniel
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2
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6
answers
823
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6
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... Seconding the 'finding my own posts' point, only yesterday I was trying to find an old answer of mine to put to a duplicate question and gave up after 5 mins of searching and scrolling because I couldn't find it. ...
written 11 weeks ago by
Daniel • 3.4k
4
votes
6
answers
823
views
6
answers
... I think the difficulty searching adds to the repeated low quality questions. ...
written 11 weeks ago by
Daniel • 3.4k
3
votes
6
answers
823
views
6
answers
... I think that could be solved quite easily with (1 ) a more restricted set of tags for questions to stop fragmenting, and (2) allowing them to be community-suggested so that new users don't have to be blamed for misattributing a question (this works quite well for games on steam) i.e.
> **Based o ...
written 11 weeks ago by
Daniel • 3.4k
1
vote
3
answers
297
views
3
answers
Comment:
C: else condition in awk
... If it's not working don't click 'accept' and tell us what the error is. ...
written 4 months ago by
Daniel • 3.4k
0
votes
1
answer
588
views
1
answers
... This is misleading, because although the NextSeq has 4 lanes, they aren't physically isolated and only one pooled library can be used, unlike the physical separation in the HiSeq. I think this is normally what people are looking for when asking about number of lanes. ...
written 5 months ago by
Daniel • 3.4k
0
votes
2
answers
305
views
2
answers
... Fantastic, I'll give this a go! ...
written 5 months ago by
Daniel • 3.4k
6
votes
2
answers
305
views
7 follow
2
answers
... I'm using trimmomatic mainly to filter out adapters in the read through of my paired end illumina data.
My command is as follows, and produces expected results:
java -jar trimmomatic-0.33.jar PE 01_R1.fastq 01_R2.fastq 01_R1-trimpair.fastq 01_R1-trimunpair.fastq 01_R2-trimpair.fastq 01_R2-trim ...
written 5 months ago by
Daniel • 3.4k
2
votes
2
answers
248
views
2
answers
... I too am impatient and want to monitor how my runs are going. While what people are saying above is correct that there's not a built in method, what I normally do is use `watch` with either `grep -c ` or `wc -l` depending on your output format.
But if you want to do it in your script, either read i ...
written 5 months ago by
Daniel • 3.4k
1
vote
0
answers
372
views
0
answers
... Where do you apply to? There's no link here and the post isn't up on http://www.jobs.ac.uk/employer/wellcome-trust-sanger-institute ...
written 5 months ago by
Daniel • 3.4k
0
votes
8
answers
621
views
8
answers
Comment:
C: fasta seq header
... That's fair, yeah. Don't use `-i` until you're sure it's doing what you think it's doing! ...
written 5 months ago by
Daniel • 3.4k
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For A: Convert Fas/Qual Into Fastq?
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For Travel and accommodation bursaries for workshops on Gene expression analysis, Metabolomics, RAD analysis or Population genomics in Environmental ‘Omics
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For A: Correcting sequence reads based on ORF disruption from reference sequence.
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For Rdp, Greengenes And Arb-Silva. Are There Any Advantages Of One Over The Other?
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For A: Convert Fas/Qual Into Fastq?
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For Rdp, Greengenes And Arb-Silva. Are There Any Advantages Of One Over The Other?
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For Error when fuzzy sequence matching using String::Approx in perl
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For Travel and accommodation bursaries for workshops on Gene expression analysis, Metabolomics, RAD analysis or Population genomics in Environmental ‘Omics
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15 months ago,
created a question with more than 1,000 views.
For Travel and accommodation bursaries for workshops on Gene expression analysis, Metabolomics, RAD analysis or Population genomics in Environmental ‘Omics
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Travel and accommodation bursaries for workshops on Gene expression analysis, Metabolomics, RAD analysis or Population genomics in Environmental ‘Omics
Teacher
15 months ago,
created an answer with at least 3 up-votes.
For A: Convert Fas/Qual Into Fastq?
Appreciated
15 months ago,
created a post with more than 5 votes.
For A: Conferences On Bioinformatics
Teacher
15 months ago,
created an answer with at least 3 up-votes.
For A: Convert Fas/Qual Into Fastq?
Scholar
15 months ago,
created an answer that has been accepted.
For A: Correcting sequence reads based on ORF disruption from reference sequence.
Scholar
15 months ago,
created an answer that has been accepted.
For A: Is there a succinct method of isolating sequences phylogenetically similar to a
Good Question
15 months ago,
asked a question that was upvoted at least 5 times.
For Rdp, Greengenes And Arb-Silva. Are There Any Advantages Of One Over The Other?
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