User: Daniel

gravatar for Daniel
Daniel3.4k
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Location:
Cardiff University
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Joined:
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Posts by Daniel

<prev • 356 results • page 1 of 36 • next >
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Comment: C: Preparation for Bioinformatics.SE closing
... Seconding the 'finding my own posts' point, only yesterday I was trying to find an old answer of mine to put to a duplicate question and gave up after 5 mins of searching and scrolling because I couldn't find it. ...
written 24 days ago by Daniel3.4k
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Comment: C: Preparation for Bioinformatics.SE closing
... I think the difficulty searching adds to the repeated low quality questions. ...
written 24 days ago by Daniel3.4k
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Answer: A: Preparation for Bioinformatics.SE closing
... I think that could be solved quite easily with (1 ) a more restricted set of tags for questions to stop fragmenting, and (2) allowing them to be community-suggested so that new users don't have to be blamed for misattributing a question (this works quite well for games on steam) i.e. > **Based o ...
written 24 days ago by Daniel3.4k
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Comment: C: else condition in awk
... If it's not working don't click 'accept' and tell us what the error is. ...
written 3 months ago by Daniel3.4k
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Comment: C: How many lanes does the Nextseq (illumina) flow cell have?
... This is misleading, because although the NextSeq has 4 lanes, they aren't physically isolated and only one pooled library can be used, unlike the physical separation in the HiSeq. I think this is normally what people are looking for when asking about number of lanes. ...
written 3 months ago by Daniel3.4k
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Comment: C: What is the limiting factor for trimmomatic speed and how can it be increased?
... Fantastic, I'll give this a go! ...
written 3 months ago by Daniel3.4k
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7 follow
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What is the limiting factor for trimmomatic speed and how can it be increased?
... I'm using trimmomatic mainly to filter out adapters in the read through of my paired end illumina data. My command is as follows, and produces expected results: java -jar trimmomatic-0.33.jar PE 01_R1.fastq 01_R2.fastq 01_R1-trimpair.fastq 01_R1-trimunpair.fastq 01_R2-trimpair.fastq 01_R2-trim ...
trimmomatic fastq written 3 months ago by Daniel3.4k
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Answer: A: Progress bar to measure blast running time?
... I too am impatient and want to monitor how my runs are going. While what people are saying above is correct that there's not a built in method, what I normally do is use `watch` with either `grep -c ` or `wc -l` depending on your output format. But if you want to do it in your script, either read i ...
written 3 months ago by Daniel3.4k
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Comment: C: Senior Bioinformatician (Jones Group, Hinxton, Cambridge UK)
... Where do you apply to? There's no link here and the post isn't up on http://www.jobs.ac.uk/employer/wellcome-trust-sanger-institute ...
written 3 months ago by Daniel3.4k
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Comment: C: fasta seq header
... That's fair, yeah. Don't use `-i` until you're sure it's doing what you think it's doing! ...
written 3 months ago by Daniel3.4k

Latest awards to Daniel

Commentator 17 days ago, created a comment with at least 3 up-votes. For C: Why Didn'T Biostar Join Stack Exchange?
Teacher 24 days ago, created an answer with at least 3 up-votes. For A: Convert Fas/Qual Into Fastq?
Appreciated 7 weeks ago, created a post with more than 5 votes. For A: Conferences On Bioinformatics
Scholar 3 months ago, created an answer that has been accepted. For A: Correcting sequence reads based on ORF disruption from reference sequence.
Student 5 months ago, asked a question with at least 3 up-votes. For Rdp, Greengenes And Arb-Silva. Are There Any Advantages Of One Over The Other?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Convert Fas/Qual Into Fastq?
Good Question 8 months ago, asked a question that was upvoted at least 5 times. For Rdp, Greengenes And Arb-Silva. Are There Any Advantages Of One Over The Other?
Commentator 8 months ago, created a comment with at least 3 up-votes. For C: Why Didn'T Biostar Join Stack Exchange?
Popular Question 9 months ago, created a question with more than 1,000 views. For Error when fuzzy sequence matching using String::Approx in perl
Appreciated 10 months ago, created a post with more than 5 votes. For A: Conferences On Bioinformatics
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: Why Didn'T Biostar Join Stack Exchange?
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: Convert Fas/Qual Into Fastq?
Appreciated 14 months ago, created a post with more than 5 votes. For A: Conferences On Bioinformatics
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Convert Fas/Qual Into Fastq?
Scholar 14 months ago, created an answer that has been accepted. For A: Is there a succinct method of isolating sequences phylogenetically similar to a
Scholar 14 months ago, created an answer that has been accepted. For A: Correcting sequence reads based on ORF disruption from reference sequence.
Good Question 14 months ago, asked a question that was upvoted at least 5 times. For Rdp, Greengenes And Arb-Silva. Are There Any Advantages Of One Over The Other?
Good Answer 15 months ago, created an answer that was upvoted at least 5 times. For A: Should We Accept The Terms For The Migration To Stackexchange 2.0
Appreciated 15 months ago, created a post with more than 5 votes. For A: Conferences On Bioinformatics

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