User: Daniel
Daniel • 3.5k
- Reputation:
- 3,460
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- Cardiff University
- Last seen:
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- Joined:
- 6 years, 9 months ago
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Posts by Daniel
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2
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664
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... There are lots of jokes above, but the honest answer is that you do not want to do this. Once you have converted the file it would be so massive that it would impossible to open and use in excel before any other problems. Further, this is not an appropriate way to read the data, and 99.9% of the tim ...
written 5 weeks ago by
Daniel • 3.5k
2
votes
6
answers
886
views
6
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... Seconding the 'finding my own posts' point, only yesterday I was trying to find an old answer of mine to put to a duplicate question and gave up after 5 mins of searching and scrolling because I couldn't find it. ...
written 4 months ago by
Daniel • 3.5k
4
votes
6
answers
886
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6
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... I think the difficulty searching adds to the repeated low quality questions. ...
written 4 months ago by
Daniel • 3.5k
3
votes
6
answers
886
views
6
answers
... I think that could be solved quite easily with (1 ) a more restricted set of tags for questions to stop fragmenting, and (2) allowing them to be community-suggested so that new users don't have to be blamed for misattributing a question (this works quite well for games on steam) i.e.
> **Based o ...
written 4 months ago by
Daniel • 3.5k
1
vote
3
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355
views
3
answers
Comment:
C: else condition in awk
... If it's not working don't click 'accept' and tell us what the error is. ...
written 6 months ago by
Daniel • 3.5k
0
votes
1
answer
926
views
1
answers
... This is misleading, because although the NextSeq has 4 lanes, they aren't physically isolated and only one pooled library can be used, unlike the physical separation in the HiSeq. I think this is normally what people are looking for when asking about number of lanes. ...
written 7 months ago by
Daniel • 3.5k
0
votes
2
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420
views
2
answers
... Fantastic, I'll give this a go! ...
written 7 months ago by
Daniel • 3.5k
6
votes
2
answers
420
views
7 follow
2
answers
... I'm using trimmomatic mainly to filter out adapters in the read through of my paired end illumina data.
My command is as follows, and produces expected results:
java -jar trimmomatic-0.33.jar PE 01_R1.fastq 01_R2.fastq 01_R1-trimpair.fastq 01_R1-trimunpair.fastq 01_R2-trimpair.fastq 01_R2-trim ...
written 7 months ago by
Daniel • 3.5k
2
votes
2
answers
292
views
2
answers
... I too am impatient and want to monitor how my runs are going. While what people are saying above is correct that there's not a built in method, what I normally do is use `watch` with either `grep -c ` or `wc -l` depending on your output format.
But if you want to do it in your script, either read i ...
written 7 months ago by
Daniel • 3.5k
1
vote
0
answers
442
views
0
answers
... Where do you apply to? There's no link here and the post isn't up on http://www.jobs.ac.uk/employer/wellcome-trust-sanger-institute ...
written 7 months ago by
Daniel • 3.5k
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For Travel and accommodation bursaries for workshops on Gene expression analysis, Metabolomics, RAD analysis or Population genomics in Environmental ‘Omics
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17 months ago,
created a question with more than 1,000 views.
For Travel and accommodation bursaries for workshops on Gene expression analysis, Metabolomics, RAD analysis or Population genomics in Environmental ‘Omics
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For A: Convert Fas/Qual Into Fastq?
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For A: Is there a succinct method of isolating sequences phylogenetically similar to a
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For A: Correcting sequence reads based on ORF disruption from reference sequence.
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