User: cvu
cvu • 150
- Reputation:
- 150
- Status:
- Trusted
- Location:
- India
- Last seen:
- 1 year, 2 months ago
- Joined:
- 5 years, 9 months ago
- Email:
- s***************@gmail.com
Posts by cvu
<prev
• 65 results •
page 1 of 7 •
next >
0
votes
0
answers
392
views
0
answers
... You can use `sed` command if you just want to remove these characters
`sed 's/[N|?|-]//g' filename` ...
written 16 months ago by
cvu • 150
0
votes
0
answers
368
views
0
answers
... Hello All,
I've created a bowtie2 large index, Which is a huge data set (~100GB) it took approx 2days to generate a bowtie2 index. Now I came across problems with some sequences and I want to remove it from my existing index.
Is there a way to remove sequences based on their identifiers directly ...
written 16 months ago by
cvu • 150
0
votes
2
answers
1.1k
views
2
answers
... Did you resolve this problem? which OrgDb can be used? ...
written 24 months ago by
cvu • 150
0
votes
0
answers
514
views
0
answers
... Hi all,
I've performed fisherTests() function of bsseq bioconductor package for two samples since I've only one replicate for each samples. but fishertest result gives only two columns p.value and log2OR and I want to know its corresponding chromosome and position information. also I want to filter ...
written 2.2 years ago by
cvu • 150
0
votes
0
answers
793
views
0
answers
... Hello All,
I am running Bisulfide sequencing samples. I've directional libraries with four single-ended fastq files for each sample and completed with bismark and got four bam files which i've merged and finally got one bam file for each sample.
These are the commands I ran:
bismark --genome_ ...
0
votes
1
answer
877
views
1
answers
Comment:
C: standalone BLAST parametes
... Thanks for the reply. I want only one best match for each protein, Hence I set hsp 1. ...
written 2.4 years ago by
cvu • 150
0
votes
1
answer
877
views
1
answers
Comment:
C: standalone BLAST parametes
... Thanks for the reply. I want perfect matches, but which parameters to set to get a good match? ...
written 2.4 years ago by
cvu • 150
0
votes
1
answer
877
views
1
answer
... Hi All,
I've predicted genes in genome. Now I want to identify proteins, For that, I've blasted all predicted proteins against uniprot database.
blast parameters
blastp -query proteins.fasta -db Uniprotdb -max_target_seqs 1 -max_hsps 1 -out output.blastp -outfmt 6 -evalue 0.001
what should b ...
4
votes
0
answers
1.7k
views
0
answers
... use SRA Toolkit https://www.ncbi.nlm.nih.gov/books/NBK158900/ and use fastq-dump, for example `fastq-dump -I --split-files SRR390728` to split paired end reads. ...
written 2.6 years ago by
cvu • 150
0
votes
0
answers
1.1k
views
0
answers
... Thanks for the reply microfuge ...
written 2.6 years ago by
cvu • 150
Latest awards to cvu
Popular Question
24 months ago,
created a question with more than 1,000 views.
For how to map greengene ids to ncbi taxon ids ?
Popular Question
2.0 years ago,
created a question with more than 1,000 views.
For NameError: global name 'xticks' is not defined in graphlan_lib.py while running GraPhlAn
Great Question
2.2 years ago,
created a question with more than 5,000 views.
For Creating reference Index using Bowtie2
Epic Question
2.4 years ago,
created a question with more than 10,000 views.
For Bowtie2 parameters for best alignment
Popular Question
2.4 years ago,
created a question with more than 1,000 views.
For VariantRecalibrator Error message
Supporter
2.6 years ago,
voted at least 25 times.
Great Question
2.6 years ago,
created a question with more than 5,000 views.
For Creating reference Index using Bowtie2
Popular Question
3.2 years ago,
created a question with more than 1,000 views.
For VariantRecalibrator Error message
Popular Question
3.2 years ago,
created a question with more than 1,000 views.
For Creating reference Index using Bowtie2
Popular Question
3.2 years ago,
created a question with more than 1,000 views.
For Samtools mpileup refrence fasta file input
Popular Question
3.3 years ago,
created a question with more than 1,000 views.
For Give hyperlink to pdf table perl
Popular Question
3.5 years ago,
created a question with more than 1,000 views.
For Comparing vcf with dbSNP
Great Question
3.9 years ago,
created a question with more than 5,000 views.
For Bowtie2 parameters for best alignment
Popular Question
4.2 years ago,
created a question with more than 1,000 views.
For Comparing vcf with dbSNP
Popular Question
4.2 years ago,
created a question with more than 1,000 views.
For Creating reference Index using Bowtie2
Popular Question
4.5 years ago,
created a question with more than 1,000 views.
For Bowtie2 parameters for best alignment
Popular Question
4.8 years ago,
created a question with more than 1,000 views.
For Creating reference Index using Bowtie2
Popular Question
4.9 years ago,
created a question with more than 1,000 views.
For Creating reference Index using Bowtie2
Popular Question
4.9 years ago,
created a question with more than 1,000 views.
For Bowtie2 parameters for best alignment
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 755 users visited in the last hour