User: lethalfang

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lethalfang0
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Posts by lethalfang

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Comment: C: Any experience using SomaticSeq for RNAseq SNV?
... It's been a **long** time coming, but we've finally found the time to have SomaticSeq dockerized: - https://hub.docker.com/r/lethalfang/somaticseq/ And individual mutation callers as well: - https://github.com/bioinform/somaticseq/tree/master/utilities/dockered_pipelines/singleThread - https://g ...
written 16 months ago by lethalfang0
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Comment: C: Somaticsniper Hangs Up
... I've just run into the same problem with SomaticSniper 1.0.4.  The job got stuck somewhere around chrUn_gl000241. SomaticSniper is running at 100% but no progress is made.    ...
written 4.0 years ago by lethalfang0
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Comment: C: Bedtools Compare Multiple Bed Files?
... Almost exactly what I'm looking for. Is there a way to also print out all the features from each of the 3 bed files?  Thanks.  ...
written 4.6 years ago by lethalfang0

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