User: midox

gravatar for midox
midox180
Reputation:
180
Status:
Trusted
Location:
Tunisia
Last seen:
2 months, 2 weeks ago
Joined:
3 years, 2 months ago
Email:
m***********@gmail.com

Posts by midox

<prev • 264 results • page 1 of 27 • next >
0
votes
2
answers
203
views
2
answers
Comment: C: Reads length Distribution of ONT reads and Error rate
... oups sorry. To Brian. and everyone ...
written 12 weeks ago by midox180
0
votes
2
answers
203
views
2
answers
Comment: C: Reads length Distribution of ONT reads and Error rate
... Please brian. When I do mapping sequences on the reference genomes using BBmap I consider the overall mapping rate in "**pct bases**" ?? Thanks ...
written 12 weeks ago by midox180
0
votes
2
answers
203
views
2
answers
Comment: C: Reads length Distribution of ONT reads and Error rate
... I am looking for a distribution that already exists of number of nanopore reads according to their lengths and the different error rates. If I can do it with BBmap I try to map the raw reads on the reference genome and extract this informations. ...
written 12 weeks ago by midox180
0
votes
2
answers
203
views
2
answers
Comment: C: Reads length Distribution of ONT reads and Error rate
... in the case of PacBio reads or i can also use Nanopore? ...
written 12 weeks ago by midox180
1
vote
2
answers
203
views
2
answers
Reads length Distribution of ONT reads and Error rate
... Hello, I want to know the distribution of the reads and the error rate (mismatch, insertion, deletion) of the Nanopore Sequencing Technology. Thank you ...
reads distribution ngs error rate nanopore written 12 weeks ago by midox180 • updated 12 weeks ago by WouterDeCoster20k
0
votes
1
answer
157
views
1
answers
Comment: C: Mapping Reads to Reference Genome (Statistics)
... PacBio and Nanopore Reads. ...
written 3 months ago by midox180
0
votes
1
answer
157
views
1
answers
Comment: C: Mapping Reads to Reference Genome (Statistics)
... i want for DNA but tophat2 and Stringtie are for RNA! ...
written 3 months ago by midox180
0
votes
1
answer
157
views
1
answers
Comment: C: Mapping Reads to Reference Genome (Statistics)
... I tried with **Blasr** but it gives me a rate file of the mapping of each sequence that's why I want a tool that gives me general statistics of all sequences file. I will try them thank you. ...
written 3 months ago by midox180
0
votes
1
answer
157
views
1
answer
Mapping Reads to Reference Genome (Statistics)
... Hello, I try to know the rate of mapping, overall error rate... of my sequences so I wanted to know a good mapping tool that gives me general statistics of mapping of my sequences. Do you have any suggestions? Thank you ...
ngs alignment error rate mapping mapping tools written 3 months ago by midox180 • updated 3 months ago by EVR430
0
votes
1
answer
194
views
1
answers
Comment: C: PacBioToCA problem in correction
... have you any response to this? please ...
written 3 months ago by midox180

Latest awards to midox

Popular Question 4 months ago, created a question with more than 1,000 views. For E. coli K12 MG1655 datasets from Illumina
Popular Question 4 months ago, created a question with more than 1,000 views. For NaS (Nanopore Synthetic-long) help
Popular Question 5 months ago, created a question with more than 1,000 views. For E. coli K12 MG1655 datasets from Illumina
Popular Question 5 months ago, created a question with more than 1,000 views. For E. coli K12 MG1655 datasets from Illumina
Popular Question 6 months ago, created a question with more than 1,000 views. For E. coli K12 MG1655 datasets from Illumina
Popular Question 10 months ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 10 months ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 12 months ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 12 months ago, created a question with more than 1,000 views. For PacBio Technology Assemblers
Popular Question 12 months ago, created a question with more than 1,000 views. For Long reads Assembly Algorithms
Popular Question 14 months ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 14 months ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 17 months ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 18 months ago, created a question with more than 1,000 views. For Long reads Assembly Algorithms
Popular Question 18 months ago, created a question with more than 1,000 views. For Long reads Assembly Algorithms
Centurion 21 months ago, created 100 posts.
Supporter 2.1 years ago, voted at least 25 times.
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: What tools you use or kow for PacBio Long Read error correction?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 745 users visited in the last hour