User: midox

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midox240
Reputation:
240
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Location:
Tunisia
Last seen:
3 months, 4 weeks ago
Joined:
5 years, 9 months ago
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Posts by midox

<prev • 271 results • page 1 of 28 • next >
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Raw Data from Oxford Nanopore Sequencing Technology
... Hello, I need long reads rawdata generated by MinIon sequencer from Oxford nanopore technology? Can you help me? Thank you ...
naopore ngs minion long reads rawdata written 21 months ago by midox240 • updated 21 months ago by h.mon29k
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BBMAP mapping Algorithm explanation: HELP!
... Hello, do you know BBMAP algorithm steps or who can explain briefly the BBmap process? Thank you for your help ...
ngs alignment bbmap mapping written 21 months ago by midox240 • updated 21 months ago by genomax78k
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Comment: A: Using BLAST Alignment with low sensitivity
... no, it's the opposite. I want to find sequences with low similarity. ...
written 24 months ago by midox240
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Using BLAST Alignment with low sensitivity
... Hello, I would like to use BLAST with Low sensitivity(using DNA sequences). Wha't the best paramters should i choose? this is my command: blastn -query query.fa -subject subject.fasta -out resultatblastn_cerevisae_real -reward 5 -penalty -4 -gapopen 10 -gapextend 6 -evalue 1 should i change ...
alignment sequence blast written 24 months ago by midox240 • updated 24 months ago by a.zielezinski9.0k
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Comment: C: how LoRMA correct the long reads (more explanations)
... any response please?! thanks ...
written 2.3 years ago by midox240
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Comment: C: how Lordec maps the long reads to DeBruijn Graph
... have more details in this phases? because it's not clear in the paper. Thanks ...
written 2.3 years ago by midox240
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Answer: A: how Lordec maps the long reads to DeBruijn Graph
... thank you for your response. And LORMA? have you an explanation about LORMA? Thanks ...
written 2.3 years ago by midox240
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how Lordec maps the long reads to DeBruijn Graph
... hello, I would like how LorDEC maps long reads to debruijn graph. After construction of deBruijn graph of short reads how map the set of erroneous long reads to DeBuijn graph. it's not clear in the paper. can you help me please? Thank you for your response. ...
ngs lordec long reads error correction written 2.3 years ago by midox240
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Comment: C: Reads length Distribution of ONT reads and Error rate
... oups sorry. To Brian. and everyone ...
written 2.8 years ago by midox240
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Comment: C: Reads length Distribution of ONT reads and Error rate
... Please brian. When I do mapping sequences on the reference genomes using BBmap I consider the overall mapping rate in "**pct bases**" ?? Thanks ...
written 2.8 years ago by midox240

Latest awards to midox

Popular Question 21 months ago, created a question with more than 1,000 views. For alignments of DNA sequences
Popular Question 21 months ago, created a question with more than 1,000 views. For short reads Assembly in contigs
Popular Question 21 months ago, created a question with more than 1,000 views. For cleaning NGS Data: tool?
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Popular Question 21 months ago, created a question with more than 1,000 views. For run newbler v2.9 in command line
Popular Question 21 months ago, created a question with more than 1,000 views. For Reads Simulation and Read Simulator
Popular Question 21 months ago, created a question with more than 1,000 views. For paired inforamtion to construct Scaffolds
Popular Question 21 months ago, created a question with more than 1,000 views. For mapping rate from sam format
Popular Question 21 months ago, created a question with more than 1,000 views. For good scaffolder tool !
Popular Question 21 months ago, created a question with more than 1,000 views. For convert sam format to axt Format
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Popular Question 21 months ago, created a question with more than 1,000 views. For Reference Genome of Saccharomyces cerevisiae S288C.
Popular Question 21 months ago, created a question with more than 1,000 views. For Spades Assembler output
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Popular Question 21 months ago, created a question with more than 1,000 views. For paired end illumina reads
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Popular Question 21 months ago, created a question with more than 1,000 views. For short reads Assembly in contigs
Great Question 23 months ago, created a question with more than 5,000 views. For Blastn(Strand= Plus/Minus and Plus/Plus) explication
Popular Question 23 months ago, created a question with more than 1,000 views. For run newbler v2.9 in command line
Popular Question 23 months ago, created a question with more than 1,000 views. For Reads Simulation and Read Simulator
Popular Question 23 months ago, created a question with more than 1,000 views. For run newbler v2.9 in command line
Popular Question 24 months ago, created a question with more than 1,000 views. For Reads Simulation and Read Simulator
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Reads Simulation and Read Simulator
Popular Question 2.2 years ago, created a question with more than 1,000 views. For MinIon 2D reads

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