User: midox

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midox260
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260
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Location:
Tunisia
Last seen:
8 months, 1 week ago
Joined:
6 years, 1 month ago
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Posts by midox

<prev • 271 results • page 1 of 28 • next >
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Raw Data from Oxford Nanopore Sequencing Technology
... Hello, I need long reads rawdata generated by MinIon sequencer from Oxford nanopore technology? Can you help me? Thank you ...
naopore ngs minion long reads rawdata written 2.1 years ago by midox260 • updated 2.1 years ago by h.mon30k
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BBMAP mapping Algorithm explanation: HELP!
... Hello, do you know BBMAP algorithm steps or who can explain briefly the BBmap process? Thank you for your help ...
ngs alignment bbmap mapping written 2.1 years ago by midox260 • updated 2.1 years ago by genomax85k
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Comment: A: Using BLAST Alignment with low sensitivity
... no, it's the opposite. I want to find sequences with low similarity. ...
written 2.4 years ago by midox260
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Using BLAST Alignment with low sensitivity
... Hello, I would like to use BLAST with Low sensitivity(using DNA sequences). Wha't the best paramters should i choose? this is my command: blastn -query query.fa -subject subject.fasta -out resultatblastn_cerevisae_real -reward 5 -penalty -4 -gapopen 10 -gapextend 6 -evalue 1 should i change ...
alignment sequence blast written 2.4 years ago by midox260 • updated 2.4 years ago by a.zielezinski9.2k
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Comment: C: how LoRMA correct the long reads (more explanations)
... any response please?! thanks ...
written 2.7 years ago by midox260
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Comment: C: how Lordec maps the long reads to DeBruijn Graph
... have more details in this phases? because it's not clear in the paper. Thanks ...
written 2.7 years ago by midox260
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Answer: A: how Lordec maps the long reads to DeBruijn Graph
... thank you for your response. And LORMA? have you an explanation about LORMA? Thanks ...
written 2.7 years ago by midox260
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how Lordec maps the long reads to DeBruijn Graph
... hello, I would like how LorDEC maps long reads to debruijn graph. After construction of deBruijn graph of short reads how map the set of erroneous long reads to DeBuijn graph. it's not clear in the paper. can you help me please? Thank you for your response. ...
ngs lordec long reads error correction written 2.7 years ago by midox260
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Comment: C: Reads length Distribution of ONT reads and Error rate
... oups sorry. To Brian. and everyone ...
written 3.2 years ago by midox260
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Comment: C: Reads length Distribution of ONT reads and Error rate
... Please brian. When I do mapping sequences on the reference genomes using BBmap I consider the overall mapping rate in "**pct bases**" ?? Thanks ...
written 3.2 years ago by midox260

Latest awards to midox

Popular Question 2.1 years ago, created a question with more than 1,000 views. For alignments of DNA sequences
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