User: midox

gravatar for midox
midox200
Reputation:
200
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Trusted
Location:
Tunisia
Last seen:
3 months, 3 weeks ago
Joined:
4 years, 4 months ago
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Posts by midox

<prev • 272 results • page 1 of 28 • next >
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Raw Data from Oxford Nanopore Sequencing Technology
... Hello, I need long reads rawdata generated by MinIon sequencer from Oxford nanopore technology? Can you help me? Thank you ...
naopore ngs minion long reads rawdata written 4 months ago by midox200 • updated 4 months ago by h.mon19k
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BBMAP mapping Algorithm explanation: HELP!
... Hello, do you know BBMAP algorithm steps or who can explain briefly the BBmap process? Thank you for your help ...
ngs alignment bbmap mapping written 4 months ago by midox200 • updated 4 months ago by genomax55k
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Comment: A: Using BLAST Alignment with low sensitivity
... no, it's the opposite. I want to find sequences with low similarity. ...
written 6 months ago by midox200
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Using BLAST Alignment with low sensitivity
... Hello, I would like to use BLAST with Low sensitivity(using DNA sequences). Wha't the best paramters should i choose? this is my command: blastn -query query.fa -subject subject.fasta -out resultatblastn_cerevisae_real -reward 5 -penalty -4 -gapopen 10 -gapextend 6 -evalue 1 should i change ...
alignment sequence blast written 6 months ago by midox200 • updated 6 months ago by a.zielezinski8.4k
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Comment: C: how LoRMA correct the long reads (more explanations)
... any response please?! thanks ...
written 10 months ago by midox200
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Comment: C: how Lordec maps the long reads to DeBruijn Graph
... have more details in this phases? because it's not clear in the paper. Thanks ...
written 10 months ago by midox200
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Answer: A: how Lordec maps the long reads to DeBruijn Graph
... thank you for your response. And LORMA? have you an explanation about LORMA? Thanks ...
written 10 months ago by midox200
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how Lordec maps the long reads to DeBruijn Graph
... hello, I would like how LorDEC maps long reads to debruijn graph. After construction of deBruijn graph of short reads how map the set of erroneous long reads to DeBuijn graph. it's not clear in the paper. can you help me please? Thank you for your response. ...
ngs lordec long reads error correction written 10 months ago by midox200
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Comment: C: Reads length Distribution of ONT reads and Error rate
... oups sorry. To Brian. and everyone ...
written 17 months ago by midox200
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Comment: C: Reads length Distribution of ONT reads and Error rate
... Please brian. When I do mapping sequences on the reference genomes using BBmap I consider the overall mapping rate in "**pct bases**" ?? Thanks ...
written 17 months ago by midox200

Latest awards to midox

Popular Question 3 months ago, created a question with more than 1,000 views. For short reads Assembly in contigs
Great Question 6 months ago, created a question with more than 5,000 views. For Blastn(Strand= Plus/Minus and Plus/Plus) explication
Popular Question 6 months ago, created a question with more than 1,000 views. For run newbler v2.9 in command line
Popular Question 6 months ago, created a question with more than 1,000 views. For Reads Simulation and Read Simulator
Popular Question 6 months ago, created a question with more than 1,000 views. For run newbler v2.9 in command line
Popular Question 6 months ago, created a question with more than 1,000 views. For Reads Simulation and Read Simulator
Popular Question 9 months ago, created a question with more than 1,000 views. For Reads Simulation and Read Simulator
Popular Question 9 months ago, created a question with more than 1,000 views. For MinIon 2D reads
Popular Question 9 months ago, created a question with more than 1,000 views. For mapping rate from sam format
Popular Question 9 months ago, created a question with more than 1,000 views. For Blast converter Format Output
Popular Question 10 months ago, created a question with more than 1,000 views. For Reads Simulation and Read Simulator
Popular Question 16 months ago, created a question with more than 1,000 views. For Reads Simulation and Read Simulator
Popular Question 16 months ago, created a question with more than 1,000 views. For MinIon 2D reads
Popular Question 16 months ago, created a question with more than 1,000 views. For mapping rate from sam format
Popular Question 16 months ago, created a question with more than 1,000 views. For Spades Assembler output
Popular Question 18 months ago, created a question with more than 1,000 views. For E. coli K12 MG1655 datasets from Illumina
Popular Question 18 months ago, created a question with more than 1,000 views. For NaS (Nanopore Synthetic-long) help
Popular Question 19 months ago, created a question with more than 1,000 views. For E. coli K12 MG1655 datasets from Illumina
Popular Question 19 months ago, created a question with more than 1,000 views. For E. coli K12 MG1655 datasets from Illumina
Popular Question 20 months ago, created a question with more than 1,000 views. For E. coli K12 MG1655 datasets from Illumina
Popular Question 2.0 years ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 2.1 years ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 2.2 years ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 2.2 years ago, created a question with more than 1,000 views. For PacBio Technology Assemblers
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Long reads Assembly Algorithms

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