User: midox

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midox190
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190
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Tunisia
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1 month ago
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3 years, 11 months ago
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Posts by midox

<prev • 270 results • page 1 of 27 • next >
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Comment: A: Using BLAST Alignment with low sensitivity
... no, it's the opposite. I want to find sequences with low similarity. ...
written 7 weeks ago by midox190
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Using BLAST Alignment with low sensitivity
... Hello, I would like to use BLAST with Low sensitivity(using DNA sequences). Wha't the best paramters should i choose? this is my command: blastn -query query.fa -subject subject.fasta -out resultatblastn_cerevisae_real -reward 5 -penalty -4 -gapopen 10 -gapextend 6 -evalue 1 should i change ...
alignment sequence blast written 7 weeks ago by midox190 • updated 7 weeks ago by a.zielezinski8.2k
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Comment: C: how LoRMA correct the long reads (more explanations)
... any response please?! thanks ...
written 5 months ago by midox190
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Comment: C: how Lordec maps the long reads to DeBruijn Graph
... have more details in this phases? because it's not clear in the paper. Thanks ...
written 5 months ago by midox190
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Answer: A: how Lordec maps the long reads to DeBruijn Graph
... thank you for your response. And LORMA? have you an explanation about LORMA? Thanks ...
written 5 months ago by midox190
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how Lordec maps the long reads to DeBruijn Graph
... hello, I would like how LorDEC maps long reads to debruijn graph. After construction of deBruijn graph of short reads how map the set of erroneous long reads to DeBuijn graph. it's not clear in the paper. can you help me please? Thank you for your response. ...
ngs lordec long reads error correction written 5 months ago by midox190
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Comment: C: Reads length Distribution of ONT reads and Error rate
... oups sorry. To Brian. and everyone ...
written 11 months ago by midox190
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Comment: C: Reads length Distribution of ONT reads and Error rate
... Please brian. When I do mapping sequences on the reference genomes using BBmap I consider the overall mapping rate in "**pct bases**" ?? Thanks ...
written 11 months ago by midox190
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Comment: C: Reads length Distribution of ONT reads and Error rate
... I am looking for a distribution that already exists of number of nanopore reads according to their lengths and the different error rates. If I can do it with BBmap I try to map the raw reads on the reference genome and extract this informations. ...
written 11 months ago by midox190
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Comment: C: Reads length Distribution of ONT reads and Error rate
... in the case of PacBio reads or i can also use Nanopore? ...
written 11 months ago by midox190

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