User: midox

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midox90
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Tunisia
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Posts by midox

<prev • 243 results • page 1 of 25 • next >
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Comment: C: Split a FASTA file into several equal pieces
... it's OK! thanks for your help ...
written 16 days ago by midox90
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(Closed) Split a FASTA file into several equal pieces
... Hello, I have a FASTA file I want to cut it into several pieces in equal sizes. Is there a program that can do this? Thank you ...
fasta files split written 16 days ago by midox90
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Comment: C: Blast in Biopython
... here is a simple description of my program: from Bio import SeqIO import os import sys from Bio.Blast.Applications import NcbiblastnCommandline com = NcbiblastnCommandline(query = "GGCTAGCTTT", subject = "GGCTTTCTTT", out = 'blast2') myStdout, myStderr = com() but he ...
written 26 days ago by midox90
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Comment: C: Blast in Biopython
... no it's not the same problem. the e-value problem is : i have created the SW matrix and i would determinate the e-value according to the values used in BLAST but the problem is my sequences is very long so the creation of SW matrix and recuperate the results is too long. Here, i try another solution ...
written 26 days ago by midox90
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Blast in Biopython
... hello, I have two sequences and i need to use Blast under Biopython to align these two sequences and retrieve the results in list for example. But i can't do this. can you explain me using commande line please? thanks ...
alignment biopython blast written 26 days ago by midox90
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Comment: C: calculate the e-value of alignment
... in alignment of two sequences: if i applicate the SW algorithm, i have an alignment but in other case if the two sequences do not actually align. For this, I want to calculate e-value to determine a threshold if the two sequences align (if I get a good e-value) or not. If not, if you have an idea to ...
written 26 days ago by midox90
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Comment: C: calculate the e-value of alignment
... thanks for your response. But the e-value have a sense when i compare two sequences. ...
written 26 days ago by midox90
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Answer: A: Blast E Value Calculation
... excuse me. here how can i determine the ***K*** and ***lambda*** values of the e-value formula please? thanks ...
written 27 days ago by midox90
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calculate the e-value of alignment
... hello, i used Biopython and i used the **pairwise2.align.localms** function of Smith-Waterman alignment. but in the output i have the score of alignment and i need to calculate the **e-value** of this alignment of improving the efficiency of the alignment. can you help me to calculate the **e-value* ...
alignment e-value localalignmetn written 27 days ago by midox90 • updated 26 days ago by Jean-Karim Heriche7.3k
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Comment: C: Using Standalone Blast In Biopython
... sorry i don't understand. can you explain me your response please ...
written 29 days ago by midox90

Latest awards to midox

Popular Question 4 months ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 4 months ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 5 months ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 5 months ago, created a question with more than 1,000 views. For PacBio Technology Assemblers
Popular Question 5 months ago, created a question with more than 1,000 views. For Long reads Assembly Algorithms
Popular Question 8 months ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 8 months ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 11 months ago, created a question with more than 1,000 views. For CAP3: A DNA Sequence Assembly Program
Popular Question 12 months ago, created a question with more than 1,000 views. For Long reads Assembly Algorithms
Popular Question 12 months ago, created a question with more than 1,000 views. For Long reads Assembly Algorithms
Centurion 15 months ago, created 100 posts.
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Teacher 23 months ago, created an answer with at least 3 up-votes. For A: What tools you use or kow for PacBio Long Read error correction?

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