User: Myggan

gravatar for Myggan
Myggan20
Reputation:
20
Status:
New User
Location:
Sweden
Last seen:
1 year, 4 months ago
Joined:
6 years ago
Email:
s*************@gu.se

Posts by Myggan

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Help needed running BUSCO
... If you use Hombrew for Mac, and replace your sed with gnu-sed, sed will behave as on linux. You can do this by: #If already exists, uninstall: brew uninstall gnu-sed #Install gnu-sed but instead of the default gsed, use --with-default-names brew install gnu-sed --with-default- ...
written 2.6 years ago by Myggan20
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Comment: C: Multisample vcf to table
... This worked very well! Thanks a lot! ...
written 4.0 years ago by Myggan20
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Comment: C: Multisample vcf to table
... Thanks it sounds like it could do the trick! I'll try it today, thanks! ...
written 4.0 years ago by Myggan20
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Comment: C: Multisample vcf to table
... I did try the VariantsToTable from gatk, but it won't keep my samples separated from what I can see as it sums upp the observations for each sample. Should it be able to do that? ...
written 4.0 years ago by Myggan20
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Multisample vcf to table
... Hi, I've used freebayes for calling variants on a set of bamfiles with 1 sample in each bam file. I want to somehow get a good overview over the variants that also non-bioinformaticians can look at. The VCF file looks something like this: #CHROM POS ID REF ALT QUAL FILT ...
variant calling snp sequencing written 4.0 years ago by Myggan20 • updated 2.3 years ago by kirannbishwa011.2k
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Error message exonerate, negative HSP score.
... Hello! I'm trying to annotate a genome using exonerate. My query is a fasta file of all reference genes, and my target is fasta file containing contigs. I'm using the following command to run exonerate: exonerate \ --model coding2genome \ query.fasta \ target.fasta \ --percent 90 \ --bestn 1 --s ...
annotation alignment dna written 6.0 years ago by Myggan20 • updated 6.0 years ago by Biostar ♦♦ 20

Latest awards to Myggan

Popular Question 2.4 years ago, created a question with more than 1,000 views. For Error message exonerate, negative HSP score.
Popular Question 3.9 years ago, created a question with more than 1,000 views. For Error message exonerate, negative HSP score.

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