User: fhsantanna

gravatar for fhsantanna
fhsantanna460
Reputation:
460
Status:
Trusted
Location:
Brazil
Last seen:
6 months, 1 week ago
Joined:
5 years, 9 months ago
Email:
f*********@yahoo.com.br

Posts by fhsantanna

<prev • 146 results • page 1 of 15 • next >
0
votes
0
answers
179
views
0
answers
What is the difference between binning and phylotyping?
... Searching in the literature I find these terms as synonyms, but also as different processes. After all, are these terms equivalent? ...
binning metagenomics phylotyping written 6 months ago by fhsantanna460
0
votes
1
answer
315
views
1
answers
Comment: C: Are phylogenetic reconstruction methods considered machine-learning approaches?
... Thank you very much. As I thought, it seems only a nomenclature divergence for the same thing. ...
written 7 months ago by fhsantanna460
2
votes
1
answer
315
views
1
answer
Are phylogenetic reconstruction methods considered machine-learning approaches?
... Could bayesian analysis, maximum likelihood, neighbour joining be considered unsupervised machine-learning approaches? ...
phylogeny machine learning written 7 months ago by fhsantanna460 • updated 7 months ago by Jean-Karim Heriche21k
0
votes
1
answer
1.5k
views
1
answers
Comment: C: gbk2faa: why is it not working for refseq gbk?
... https://github.com/fhsantanna/bioinfo_scripts/blob/master/gbk2faa.py Too late, I know... ...
written 8 months ago by fhsantanna460
0
votes
0
answers
247
views
0
answers
Comment: C: Speed up psiblast of 11k alignments
... At the time of posting the question, I had three Desktop computers having 20 threads in total (4, 8, and 8 threads). Fortunately, after that, we bought another pc with SSD HD and 16 threads, and I managed to do all blasts using parallel in one week, using only this new computer. ...
written 8 months ago by fhsantanna460
0
votes
0
answers
247
views
0
answers
Comment: C: Speed up psiblast of 11k alignments
... For this purpose, how do I share the database? Does the host do it automatically? ...
written 9 months ago by fhsantanna460
1
vote
0
answers
247
views
0
answers
Speed up psiblast of 11k alignments
... I have 11,000 protein alignments and I have to blast each one to 20,000 bacterial genomes using psiblast. How could I speed up this process? Is it possible using more than one computer for it using gnu parallel? Thanks. ...
parallel psiblast written 9 months ago by fhsantanna460 • updated 8 months ago by Biostar ♦♦ 20
0
votes
2
answers
316
views
2
answers
Comment: C: Getting proteins from genomic interval of a genbank file
... Could you provide your awk code, please? ...
written 9 months ago by fhsantanna460
0
votes
2
answers
316
views
2
answers
Comment: C: Getting proteins from genomic interval of a genbank file
... Sorry, you are right. I did not pay attention. Maybe your solution is faster than mine. I'll test it. Thank you again. ...
written 9 months ago by fhsantanna460
0
votes
2
answers
316
views
2
answers
Comment: C: Getting proteins from genomic interval of a genbank file
... Thank you very much. But for 100,000 files this is not feasible. ...
written 9 months ago by fhsantanna460

Latest awards to fhsantanna

Popular Question 6 months ago, created a question with more than 1,000 views. For gbk2faa: why is it not working for refseq gbk?
Great Question 6 months ago, created a question with more than 5,000 views. For How do I access genome coverage using SPADES?
Great Question 8 months ago, created a question with more than 5,000 views. For How do I access genome coverage using SPADES?
Popular Question 8 months ago, created a question with more than 1,000 views. For gbk2faa: why is it not working for refseq gbk?
Popular Question 11 months ago, created a question with more than 1,000 views. For gbk2faa: why is it not working for refseq gbk?
Popular Question 18 months ago, created a question with more than 1,000 views. For gbk2faa: why is it not working for refseq gbk?
Popular Question 18 months ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Popular Question 19 months ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Epic Question 22 months ago, created a question with more than 10,000 views. For Best software to assemble bacterial genomes
Popular Question 22 months ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Popular Question 22 months ago, created a question with more than 1,000 views. For Software to display draft genome statistics
Popular Question 22 months ago, created a question with more than 1,000 views. For Metagenomic read recruitment: best software
Popular Question 24 months ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Popular Question 24 months ago, created a question with more than 1,000 views. For Software to display draft genome statistics
Popular Question 24 months ago, created a question with more than 1,000 views. For Spades assembler artifacts? Contigs containing long nt stretches.
Popular Question 24 months ago, created a question with more than 1,000 views. For Metagenomic read recruitment: best software
Great Question 2.4 years ago, created a question with more than 5,000 views. For Extract fasta sequences from a large file using a list of names
Popular Question 2.4 years ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Student 2.4 years ago, asked a question with at least 3 up-votes. For Extract fasta sequences from a large file using a list of names
Popular Question 2.6 years ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Software to display draft genome statistics
Student 2.6 years ago, asked a question with at least 3 up-votes. For Best software to assemble bacterial genomes

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1662 users visited in the last hour