User: fhsantanna
fhsantanna • 440
- Reputation:
- 440
- Status:
- Trusted
- Location:
- Brazil
- Last seen:
- 1 week, 3 days ago
- Joined:
- 5 years, 1 month ago
- Email:
- f*********@yahoo.com.br
Posts by fhsantanna
<prev
• 145 results •
page 1 of 15 •
next >
0
votes
1
answer
199
views
1
answers
... Thank you very much. As I thought, it seems only a nomenclature divergence for the same thing. ...
written 16 days ago by
fhsantanna • 440
2
votes
1
answer
199
views
1
answer
... Could bayesian analysis, maximum likelihood, neighbour joining be considered unsupervised machine-learning approaches? ...
written 18 days ago by
fhsantanna • 440
• updated
18 days ago by
Jean-Karim Heriche ♦ 20k
0
votes
1
answer
1.3k
views
1
answers
... https://github.com/fhsantanna/bioinfo_scripts/blob/master/gbk2faa.py
Too late, I know... ...
written 22 days ago by
fhsantanna • 440
0
votes
0
answers
124
views
0
answers
... At the time of posting the question, I had three Desktop computers having 20 threads in total (4, 8, and 8 threads).
Fortunately, after that, we bought another pc with SSD HD and 16 threads, and I managed to do all blasts using parallel in one week, using only this new computer. ...
written 22 days ago by
fhsantanna • 440
0
votes
0
answers
124
views
0
answers
... For this purpose, how do I share the database? Does the host do it automatically? ...
written 8 weeks ago by
fhsantanna • 440
0
votes
0
answers
124
views
0
answers
... I have 11,000 protein alignments and I have to blast each one to 20,000 bacterial genomes using psiblast.
How could I speed up this process?
Is it possible using more than one computer for it using gnu parallel?
Thanks. ...
written 8 weeks ago by
fhsantanna • 440
• updated
23 days ago by
Biostar ♦♦ 20
0
votes
2
answers
165
views
2
answers
... Could you provide your awk code, please? ...
written 10 weeks ago by
fhsantanna • 440
0
votes
2
answers
165
views
2
answers
... Sorry, you are right. I did not pay attention. Maybe your solution is faster than mine. I'll test it. Thank you again. ...
written 10 weeks ago by
fhsantanna • 440
0
votes
2
answers
165
views
2
answers
... Thank you very much. But for 100,000 files this is not feasible. ...
written 10 weeks ago by
fhsantanna • 440
0
votes
2
answers
165
views
2
answers
... I think I managed the problem:
#!/usr/bin/env python
#Script for getting proteins in a range from a genbank file
#Usage: python get_proteins.py file start:end
#!/usr/bin/env python
#This script is a modification of the script found in Peter Cock's site (http ...
written 10 weeks ago by
fhsantanna • 440
Latest awards to fhsantanna
Great Question
5 weeks ago,
created a question with more than 5,000 views.
For How do I access genome coverage using SPADES?
Popular Question
5 weeks ago,
created a question with more than 1,000 views.
For gbk2faa: why is it not working for refseq gbk?
Popular Question
4 months ago,
created a question with more than 1,000 views.
For DOOR2 (operon predictor) does not load my fna file, do you know an alternative software?
Popular Question
4 months ago,
created a question with more than 1,000 views.
For gbk2faa: why is it not working for refseq gbk?
Popular Question
11 months ago,
created a question with more than 1,000 views.
For gbk2faa: why is it not working for refseq gbk?
Popular Question
11 months ago,
created a question with more than 1,000 views.
For How to create a Venn diagram using ortholog clusters?
Popular Question
12 months ago,
created a question with more than 1,000 views.
For How to create a Venn diagram using ortholog clusters?
Epic Question
15 months ago,
created a question with more than 10,000 views.
For Best software to assemble bacterial genomes
Popular Question
15 months ago,
created a question with more than 1,000 views.
For How to create a Venn diagram using ortholog clusters?
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Genbank submission error: ERROR: valid [SEQ_FEAT.CDSproductPackagingProblem] Protein product not packaged in nuc-prot set with nucleotide
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Software to display draft genome statistics
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Metagenomic read recruitment: best software
Popular Question
16 months ago,
created a question with more than 1,000 views.
For How to create a Venn diagram using ortholog clusters?
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Genbank submission error: ERROR: valid [SEQ_FEAT.CDSproductPackagingProblem] Protein product not packaged in nuc-prot set with nucleotide
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Software to display draft genome statistics
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Spades assembler artifacts? Contigs containing long nt stretches.
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Metagenomic read recruitment: best software
Great Question
21 months ago,
created a question with more than 5,000 views.
For Extract fasta sequences from a large file using a list of names
Popular Question
21 months ago,
created a question with more than 1,000 views.
For How to create a Venn diagram using ortholog clusters?
Student
21 months ago,
asked a question with at least 3 up-votes.
For Extract fasta sequences from a large file using a list of names
Popular Question
2.0 years ago,
created a question with more than 1,000 views.
For How to create a Venn diagram using ortholog clusters?
Popular Question
2.0 years ago,
created a question with more than 1,000 views.
For Software to display draft genome statistics
Student
2.0 years ago,
asked a question with at least 3 up-votes.
For Best software to assemble bacterial genomes
Appreciated
2.3 years ago,
created a post with more than 5 votes.
For C: Upgrade Ubuntu 16.04 to Bio Linux 8
Commentator
2.3 years ago,
created a comment with at least 3 up-votes.
For C: Upgrade Ubuntu 16.04 to Bio Linux 8
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 637 users visited in the last hour