User: fhsantanna

gravatar for fhsantanna
fhsantanna440
Reputation:
440
Status:
Trusted
Location:
Brazil
Last seen:
1 week, 3 days ago
Joined:
5 years, 1 month ago
Email:
f*********@yahoo.com.br

Posts by fhsantanna

<prev • 145 results • page 1 of 15 • next >
0
votes
1
answer
199
views
1
answers
Comment: C: Are phylogenetic reconstruction methods considered machine-learning approaches?
... Thank you very much. As I thought, it seems only a nomenclature divergence for the same thing. ...
written 16 days ago by fhsantanna440
2
votes
1
answer
199
views
1
answer
Are phylogenetic reconstruction methods considered machine-learning approaches?
... Could bayesian analysis, maximum likelihood, neighbour joining be considered unsupervised machine-learning approaches? ...
phylogeny machine learning written 18 days ago by fhsantanna440 • updated 18 days ago by Jean-Karim Heriche20k
0
votes
1
answer
1.3k
views
1
answers
Comment: C: gbk2faa: why is it not working for refseq gbk?
... https://github.com/fhsantanna/bioinfo_scripts/blob/master/gbk2faa.py Too late, I know... ...
written 22 days ago by fhsantanna440
0
votes
0
answers
124
views
0
answers
Comment: C: Speed up psiblast of 11k alignments
... At the time of posting the question, I had three Desktop computers having 20 threads in total (4, 8, and 8 threads). Fortunately, after that, we bought another pc with SSD HD and 16 threads, and I managed to do all blasts using parallel in one week, using only this new computer. ...
written 22 days ago by fhsantanna440
0
votes
0
answers
124
views
0
answers
Comment: C: Speed up psiblast of 11k alignments
... For this purpose, how do I share the database? Does the host do it automatically? ...
written 8 weeks ago by fhsantanna440
0
votes
0
answers
124
views
0
answers
Speed up psiblast of 11k alignments
... I have 11,000 protein alignments and I have to blast each one to 20,000 bacterial genomes using psiblast. How could I speed up this process? Is it possible using more than one computer for it using gnu parallel? Thanks. ...
parallel psiblast written 8 weeks ago by fhsantanna440 • updated 23 days ago by Biostar ♦♦ 20
0
votes
2
answers
165
views
2
answers
Comment: C: Getting proteins from genomic interval of a genbank file
... Could you provide your awk code, please? ...
written 10 weeks ago by fhsantanna440
0
votes
2
answers
165
views
2
answers
Comment: C: Getting proteins from genomic interval of a genbank file
... Sorry, you are right. I did not pay attention. Maybe your solution is faster than mine. I'll test it. Thank you again. ...
written 10 weeks ago by fhsantanna440
0
votes
2
answers
165
views
2
answers
Comment: C: Getting proteins from genomic interval of a genbank file
... Thank you very much. But for 100,000 files this is not feasible. ...
written 10 weeks ago by fhsantanna440
0
votes
2
answers
165
views
2
answers
Comment: C: Getting proteins from genomic interval of a genbank file
... I think I managed the problem: #!/usr/bin/env python #Script for getting proteins in a range from a genbank file #Usage: python get_proteins.py file start:end #!/usr/bin/env python #This script is a modification of the script found in Peter Cock's site (http ...
written 10 weeks ago by fhsantanna440

Latest awards to fhsantanna

Great Question 5 weeks ago, created a question with more than 5,000 views. For How do I access genome coverage using SPADES?
Popular Question 5 weeks ago, created a question with more than 1,000 views. For gbk2faa: why is it not working for refseq gbk?
Popular Question 4 months ago, created a question with more than 1,000 views. For gbk2faa: why is it not working for refseq gbk?
Popular Question 11 months ago, created a question with more than 1,000 views. For gbk2faa: why is it not working for refseq gbk?
Popular Question 11 months ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Popular Question 12 months ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Epic Question 15 months ago, created a question with more than 10,000 views. For Best software to assemble bacterial genomes
Popular Question 15 months ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Popular Question 15 months ago, created a question with more than 1,000 views. For Software to display draft genome statistics
Popular Question 15 months ago, created a question with more than 1,000 views. For Metagenomic read recruitment: best software
Popular Question 16 months ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Popular Question 16 months ago, created a question with more than 1,000 views. For Software to display draft genome statistics
Popular Question 16 months ago, created a question with more than 1,000 views. For Spades assembler artifacts? Contigs containing long nt stretches.
Popular Question 16 months ago, created a question with more than 1,000 views. For Metagenomic read recruitment: best software
Great Question 21 months ago, created a question with more than 5,000 views. For Extract fasta sequences from a large file using a list of names
Popular Question 21 months ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Student 21 months ago, asked a question with at least 3 up-votes. For Extract fasta sequences from a large file using a list of names
Popular Question 2.0 years ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Popular Question 2.0 years ago, created a question with more than 1,000 views. For Software to display draft genome statistics
Student 2.0 years ago, asked a question with at least 3 up-votes. For Best software to assemble bacterial genomes
Appreciated 2.3 years ago, created a post with more than 5 votes. For C: Upgrade Ubuntu 16.04 to Bio Linux 8
Commentator 2.3 years ago, created a comment with at least 3 up-votes. For C: Upgrade Ubuntu 16.04 to Bio Linux 8

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 637 users visited in the last hour