User: fhsantanna

gravatar for fhsantanna
fhsantanna490
Reputation:
490
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Trusted
Location:
Brazil
Last seen:
3 months, 2 weeks ago
Joined:
6 years, 5 months ago
Email:
f*********@yahoo.com.br

Posts by fhsantanna

<prev • 150 results • page 1 of 15 • next >
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Comment: C: Protocol for genome assembly of Sars-cov-2 sequences
... Spades is for de novo assembly, isn't it? Wouldn't a reference based assembly method be faster? ...
written 3 months ago by fhsantanna490
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Comment: C: Protocol for genome assembly of Sars-cov-2 sequences
... Yes, Kevin. It is the ampliseq panel for SARS-CoV-2. Could you please give me more details about it? I have inquired the technical support the same question, but they responded that we would have to use basespace. ...
written 3 months ago by fhsantanna490
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Protocol for genome assembly of Sars-cov-2 sequences
... Do you have a protocol using open source software for assembling SARS-CoV-2 genome sequences after Ampliseq sequencing? ...
sars genome sars-cov-2 assembly written 3 months ago by fhsantanna490 • updated 3 months ago by genomax91k
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Color genes/proteins based on taxonomic best-hit (bacterial genome)
... I am working with a genome sequence of a bacterial thermophile. Its genome seems to be very "chimeric", because the best-hits of each gene are from different taxonomic groups. Do you know a program to plot the genome and color its genes based on taxonomy? Something like this picture: ![https://www.n ...
hgt genome bacteria thermophiles plot written 5 months ago by fhsantanna490
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What is the difference between binning and phylotyping?
... Searching in the literature I find these terms as synonyms, but also as different processes. After all, are these terms equivalent? ...
binning metagenomics phylotyping written 15 months ago by fhsantanna490
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Comment: C: Are phylogenetic reconstruction methods considered machine-learning approaches?
... Thank you very much. As I thought, it seems only a nomenclature divergence for the same thing. ...
written 16 months ago by fhsantanna490
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Are phylogenetic reconstruction methods considered machine-learning approaches?
... Could bayesian analysis, maximum likelihood, neighbour joining be considered unsupervised machine-learning approaches? ...
phylogeny machine learning written 16 months ago by fhsantanna490 • updated 3 months ago by optimusfox110
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Comment: C: gbk2faa: why is it not working for refseq gbk?
... https://github.com/fhsantanna/bioinfo_scripts/blob/master/gbk2faa.py Too late, I know... ...
written 16 months ago by fhsantanna490
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Comment: C: Speed up psiblast of 11k alignments
... At the time of posting the question, I had three Desktop computers having 20 threads in total (4, 8, and 8 threads). Fortunately, after that, we bought another pc with SSD HD and 16 threads, and I managed to do all blasts using parallel in one week, using only this new computer. ...
written 16 months ago by fhsantanna490
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Comment: C: Speed up psiblast of 11k alignments
... For this purpose, how do I share the database? Does the host do it automatically? ...
written 17 months ago by fhsantanna490

Latest awards to fhsantanna

Popular Question 14 months ago, created a question with more than 1,000 views. For gbk2faa: why is it not working for refseq gbk?
Epic Question 14 months ago, created a question with more than 10,000 views. For Extract fasta sequences from a large file using a list of names
Popular Question 14 months ago, created a question with more than 1,000 views. For gbk2faa: why is it not working for refseq gbk?
Great Question 15 months ago, created a question with more than 5,000 views. For How do I access genome coverage using SPADES?
Great Question 16 months ago, created a question with more than 5,000 views. For How do I access genome coverage using SPADES?
Popular Question 16 months ago, created a question with more than 1,000 views. For gbk2faa: why is it not working for refseq gbk?
Popular Question 20 months ago, created a question with more than 1,000 views. For gbk2faa: why is it not working for refseq gbk?
Popular Question 2.2 years ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Popular Question 2.2 years ago, created a question with more than 1,000 views. For gbk2faa: why is it not working for refseq gbk?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Popular Question 2.5 years ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Software to display draft genome statistics
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Metagenomic read recruitment: best software
Epic Question 2.5 years ago, created a question with more than 10,000 views. For Best software to assemble bacterial genomes
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Spades assembler artifacts? Contigs containing long nt stretches.
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Metagenomic read recruitment: best software
Popular Question 2.6 years ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Software to display draft genome statistics
Student 3.1 years ago, asked a question with at least 3 up-votes. For Extract fasta sequences from a large file using a list of names
Great Question 3.1 years ago, created a question with more than 5,000 views. For Extract fasta sequences from a large file using a list of names
Popular Question 3.1 years ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?
Popular Question 3.3 years ago, created a question with more than 1,000 views. For How to create a Venn diagram using ortholog clusters?

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