User: fhsantanna
fhsantanna • 460
- Reputation:
- 460
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- Location:
- Brazil
- Last seen:
- 6 months, 1 week ago
- Joined:
- 5 years, 9 months ago
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- f*********@yahoo.com.br
Posts by fhsantanna
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... Searching in the literature I find these terms as synonyms, but also as different processes. After all, are these terms equivalent? ...
written 6 months ago by
fhsantanna • 460
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... Thank you very much. As I thought, it seems only a nomenclature divergence for the same thing. ...
written 7 months ago by
fhsantanna • 460
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... Could bayesian analysis, maximum likelihood, neighbour joining be considered unsupervised machine-learning approaches? ...
written 7 months ago by
fhsantanna • 460
• updated
7 months ago by
Jean-Karim Heriche ♦ 21k
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... https://github.com/fhsantanna/bioinfo_scripts/blob/master/gbk2faa.py
Too late, I know... ...
written 8 months ago by
fhsantanna • 460
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... At the time of posting the question, I had three Desktop computers having 20 threads in total (4, 8, and 8 threads).
Fortunately, after that, we bought another pc with SSD HD and 16 threads, and I managed to do all blasts using parallel in one week, using only this new computer. ...
written 8 months ago by
fhsantanna • 460
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... For this purpose, how do I share the database? Does the host do it automatically? ...
written 9 months ago by
fhsantanna • 460
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... I have 11,000 protein alignments and I have to blast each one to 20,000 bacterial genomes using psiblast.
How could I speed up this process?
Is it possible using more than one computer for it using gnu parallel?
Thanks. ...
written 9 months ago by
fhsantanna • 460
• updated
8 months ago by
Biostar ♦♦ 20
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... Could you provide your awk code, please? ...
written 9 months ago by
fhsantanna • 460
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... Sorry, you are right. I did not pay attention. Maybe your solution is faster than mine. I'll test it. Thank you again. ...
written 9 months ago by
fhsantanna • 460
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... Thank you very much. But for 100,000 files this is not feasible. ...
written 9 months ago by
fhsantanna • 460
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