User: fhsantanna
fhsantanna • 490
- Reputation:
- 490
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- Location:
- Brazil
- Last seen:
- 3 months, 2 weeks ago
- Joined:
- 6 years, 5 months ago
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Posts by fhsantanna
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... Spades is for de novo assembly, isn't it? Wouldn't a reference based assembly method be faster? ...
written 3 months ago by
fhsantanna • 490
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... Yes, Kevin. It is the ampliseq panel for SARS-CoV-2. Could you please give me more details about it?
I have inquired the technical support the same question, but they responded that we would have to use basespace. ...
written 3 months ago by
fhsantanna • 490
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... Do you have a protocol using open source software for assembling SARS-CoV-2 genome sequences after Ampliseq sequencing?
...
written 3 months ago by
fhsantanna • 490
• updated
3 months ago by
genomax ♦ 91k
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... I am working with a genome sequence of a bacterial thermophile.
Its genome seems to be very "chimeric", because the best-hits of each gene are from different taxonomic groups.
Do you know a program to plot the genome and color its genes based on taxonomy? Something like this picture: ![https://www.n ...
written 5 months ago by
fhsantanna • 490
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... Searching in the literature I find these terms as synonyms, but also as different processes. After all, are these terms equivalent? ...
written 15 months ago by
fhsantanna • 490
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... Thank you very much. As I thought, it seems only a nomenclature divergence for the same thing. ...
written 16 months ago by
fhsantanna • 490
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5 follow
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... Could bayesian analysis, maximum likelihood, neighbour joining be considered unsupervised machine-learning approaches? ...
written 16 months ago by
fhsantanna • 490
• updated
3 months ago by
optimusfox11 • 0
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... https://github.com/fhsantanna/bioinfo_scripts/blob/master/gbk2faa.py
Too late, I know... ...
written 16 months ago by
fhsantanna • 490
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424
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... At the time of posting the question, I had three Desktop computers having 20 threads in total (4, 8, and 8 threads).
Fortunately, after that, we bought another pc with SSD HD and 16 threads, and I managed to do all blasts using parallel in one week, using only this new computer. ...
written 16 months ago by
fhsantanna • 490
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424
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... For this purpose, how do I share the database? Does the host do it automatically? ...
written 17 months ago by
fhsantanna • 490
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For How do I access genome coverage using SPADES?
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For Metagenomic read recruitment: best software
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