User: gsk1185

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gsk118520
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Posts by gsk1185

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Comment: C: Want Help regarding Text parsing.
... Sorry, text output looking weird . Not looking like what i want. So i have one file having three coloumns. 1. Chrmosome 2. Start 1 ,Start 2,Start 3 ++ 3. END1,END2,END3 ++ want in format like Three coloumns Chr Start1 END1 Chr Start2 END2 ...
written 9 months ago by gsk118520
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Want Help regarding Text parsing.
... I Have a file Like This chr1 11873,12612,13220, 12227,12721,14409, chr1 14361,14969,15795,16606, 14829,15038,15947,16765, chr1 69090, 70008, Want to convert it into file like this chr1 11873 12227 chr1 12612 12721 chr1 13220 14409 chr1 14361 14829 chr1 14969 15038 ...
awk text written 9 months ago by gsk118520 • updated 9 months ago by Pierre Lindenbaum115k
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Answer: A: Exons Numbers associated with each gene
... Thank you All. I think i have found solution. https://groups.google.com/a/soe.ucsc.edu/forum/#!msg/genome/_6asF5KciPc/VTm611kJHAAJ ...
written 9 months ago by gsk118520
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Comment: C: Exons Numbers associated with each gene
... Yes finswimmer i am looking for canonical transcript only. Is it possible in Biomart?? i will also try to install Ensembl's REST-API but it seems to have lot of dependencies. Thanks ...
written 9 months ago by gsk118520
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Comment: C: Exons Numbers associated with each gene
... http://grch37.ensembl.org/biomart/martview/b16167edebe773e37076a55ffd569ee0?VIRTUALSCHEMANAME=default&ATTRIBUTES=hsapiens_gene_ensembl.default.structure.ensembl_gene_id|hsapiens_gene_ensembl.default.structure.ensembl_transcript_id|hsapiens_gene_ensembl.default.structure.external_gene_name|hsapie ...
written 9 months ago by gsk118520
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Exons Numbers associated with each gene
... How can I download Exons coordinates & exon Numbers associated with each gene for only **one transcript per Gene**?I know there are many transcript per Gene. have tried biomart & Table browser but it gives me result for all the transcript. ...
genome gene next-gen written 9 months ago by gsk118520
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Comment: C: Problem generating Varscn2 copynumber output
... Dear Pierre, Thanks for the reply. I have tried using both ways but getting sample error.   ...
written 4.6 years ago by gsk118520
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Problem generating Varscn2 copynumber output
... Hi, I'm trying to generate CNVs using Varscan2. I am getting following ERROR java -jar /opt/VarScan.v2.3.6.jar copynumber normal.mpliup tumor.mpliup Normal Pileup: normal.mpliup Tumor Pileup: tumor.mpliup Min coverage:    10 Min avg qual:    15 P-value thresh:    0.01 Exception in thread "main" ja ...
varscan varscan2 cnv copy number analysis written 4.6 years ago by gsk118520 • updated 4.2 years ago by russhh4.1k

Latest awards to gsk1185

Scholar 9 months ago, created an answer that has been accepted. For A: Exons Numbers associated with each gene
Popular Question 4.6 years ago, created a question with more than 1,000 views. For Problem generating Varscn2 copynumber output
Student 4.6 years ago, asked a question with at least 3 up-votes. For Problem generating Varscn2 copynumber output

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