User: Vladimir Chupakhin

Reputation:
520
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Trusted
Location:
Toledo, Spain
Website:
http://farmacokratia.b...
Last seen:
4 years, 1 month ago
Joined:
8 years, 8 months ago
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Mining life science data

Posts by Vladimir Chupakhin

<prev • 83 results • page 1 of 9 • next >
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Answer: A: Any free QSAR softwares
... I would go with AZorange https://github.com/AZcompTox/AZOrange ...
written 4.1 years ago by Vladimir Chupakhin520
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Answer: A: Automatically Recognize Which Chains Are From Protein And Which Chains From Liga
... Go with BioPython, this library have very nice PDB functionality. ...
written 5.4 years ago by Vladimir Chupakhin520
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Comment: C: How To Identify Rotamer States From A Pdb ?
... yep, it's. fixed blabla-bla---- Your content is only 10 charactes long. The minimum is 15. ...
written 5.5 years ago by Vladimir Chupakhin520
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Answer: A: How To Identify Rotamer States From A Pdb ?
... Check the Bio.PDB module of Biopython package ...
written 5.5 years ago by Vladimir Chupakhin520
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Answer: A: Go In Non-Model Organisms
... Maybe trying homologue/orthologue databases can be helpful. Uniprot mapping service can help with that. ...
written 5.7 years ago by Vladimir Chupakhin520
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Answer: A: Finding Structures Of Protein Complexes!
... PDB server perfectly accept uniprot IDs and other protein related IDs! Or use uniprot mapping service! And don't forget to use more exclamation marks, people will understand you better!!! ...
written 5.7 years ago by Vladimir Chupakhin520
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Answer: A: How Study Aromatic-Aromatic Interactions And Amino-Aromatic Interactions Of Prot
... Software and databases from CCDC can perfectly do this job, but it's paid. Also interaction fingerprints (IFP) can encode the aromatic interactions between protein and ligand: PLIF - opensource IFP library, honestly don't know if the aromatic interaction is included in it. FingerPrintLib - by Didier ...
written 6.0 years ago by Vladimir Chupakhin520
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Answer: A: Database Or Repository Containing All Protein Structures From Pdb In Docking Rea
... try sc-pdb, is not full and updated on yearly basis, but ready to dock. preparing the pdb's is a really REALLY tremendous task. ...
written 6.0 years ago by Vladimir Chupakhin520
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Answer: A: Download Kegg Pathway Figure With Highlighted Genes
... Here is the link http://david.abcc.ncifcrf.gov/kegg.jsp?path=hsa05200$Pathways%20in%20cancer&termId=470038899&source=kegg and here is the direct image link http://www.genome.jp/kegg/pathway/hsa/hsa05200.png I suppose it will be not hard to find the similarity. ...
written 6.0 years ago by Vladimir Chupakhin520
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Comment: C: R Or Python Package For Reverse/Inverse Docking ( To Use A Ligand To Fish All Th
... another relevant question: Do author know what inverse docking is? ...
written 6.0 years ago by Vladimir Chupakhin520

Latest awards to Vladimir Chupakhin

Popular Question 5.1 years ago, created a question with more than 1,000 views. For Protein Functional Classes
Teacher 5.4 years ago, created an answer with at least 3 up-votes. For A: Implementation Of Π-Π And Aromatic Interactions In Protein-Ligand Interactions
Scholar 5.4 years ago, created an answer that has been accepted. For A: How To Obtain True Positive And True Negative Datasets To Be Used In Training A
Supporter 5.5 years ago, voted at least 25 times.
Teacher 7.6 years ago, created an answer with at least 3 up-votes. For A: Implementation Of Π-Π And Aromatic Interactions In Protein-Ligand Interactions
Teacher 7.6 years ago, created an answer with at least 3 up-votes. For A: List Of Organization That Are Looking For Freelancer Bioinformatics, Genetics Or
Teacher 7.8 years ago, created an answer with at least 3 up-votes. For A: Protein Small Molecular Docking

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