User: Jason Lin
Jason Lin • 0
- Reputation:
- 0
- Status:
- New User
- Last seen:
- 6 years, 5 months ago
- Joined:
- 6 years, 7 months ago
- Email:
- j********@rutgers.edu
Profile information, website and location are not shown for new users.
This helps us discourage the inappropriate use of our site.
Posts by Jason Lin
<prev
• 8 results •
page 1 of 1 •
next >
2
votes
1
answer
2.8k
views
1
answer
... Hi all,
Sorry to bother you all again. so I have a text file which contains the PDBID and corresponding missing coordinates from PDB file. Such as:
1FZ2 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
1FZ4 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
1FZ5 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
1FZ8 1 2 3 4 5 ...
0
votes
1
answer
1.3k
views
1
answers
Comment:
C: How to sort PDB name
... Thank you so much! Since I'm using mac and sort in terminal really helped!
...
written 6.5 years ago by
Jason Lin • 0
3
votes
1
answer
1.3k
views
1
answer
... Hey guys,
So I have a file contains PDB ID and SEG signal regions. which looks like this:
1JCE 339 340 341 342 343 344
1RQE 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539
1VRA 7 8 9 10 11 12 186 187 188 189 190 191 192 193 194 195 196 197 198 199
2H17 3 ...
written 6.5 years ago by
Jason Lin • 0
• updated
6.5 years ago by
David Fredman • 1.1k
0
votes
1
answer
2.9k
views
1
answer
... Hi there,
So I have lists which contain the PDBID for protein sequence and protein sequence such as:
>102L MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNL
>103L MNIF ...
written 6.5 years ago by
Jason Lin • 0
• updated
6.5 years ago by
João Rodrigues • 2.5k
0
votes
1
answer
3.5k
views
1
answers
... It helped. But for this I still don't understand how to solve number 2 and 3 in my goal. which is the total number of missing coordinates and the range of those missing coordinates.
...
written 6.5 years ago by
Jason Lin • 0
0
votes
1
answer
3.5k
views
1
answer
... I have a protein sequence file looks like this:
>102L:A MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNL ---------------------------------------------------------------- ...
2
votes
1
answer
1.6k
views
1
answer
... So this is a follow up to my previous question. Thanks to @mdml. My previous question about How to align and compare two elements (sequence) in a list using python have been solved. Here is the code that I'm using (Code credit to mdml):
# Parse the file which was already split into split_list
line ...
4
votes
3
answers
2.0k
views
3
answers
... here is my question:
I've got a file which looks like this:
103L Sequence: MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNSLDAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNL Disorder: ----------------------------------XXXXXX----- ...
written 6.5 years ago by
Jason Lin • 0
• updated
6.5 years ago by
Matt Shirley ♦ 9.5k
Latest awards to Jason Lin
Autobiographer
6.6 years ago,
has more than 80 characters in the information field of the user's profile.
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1679 users visited in the last hour